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busco

1,698
Total Errors
1471
Unique Error Types
186
Affected Users

Exit Codes

Exit CodeCount
11,516
13753
2552

Destinations

DestinationCount
bridges2583
expanse498
jetstream2296
anvil255
jetstream2_vgp47

All Unique Error Messages

CountError Message
52cp: cannot stat 'busco_galaxy/run_/full_table.tsv': No such file or directory
5/usr/local/lib/python3.10/site-packages/Bio/SeqIO/FastaIO.py:203: BiopythonDeprecationWarning: Pre
Show full stderr/usr/local/lib/python3.10/site-packages/Bio/SeqIO/FastaIO.py:203: BiopythonDeprecationWarning: Previously, the FASTA parser silently ignored comments at the beginning of the FASTA file (before the first sequence). Nowadays, the FASTA file format is usually understood not to have any such comments, and most software packages do not allow them. Therefore, the use of comments at the beginning of a FASTA file is now deprecated in Biopython. In a future Biopython release, this deprecation warning will be replaced by a ValueError. To avoid this, there are three options: (1) Modify your FASTA file to remove such comments at the beginning of the file. (2) Use SeqIO.parse with the 'fasta-pearson' format instead of 'fasta'. This format is consistent with the FASTA format defined by William Pearson's FASTA aligner software. Thie format allows for comments before the first sequence; lines starting with the ';' character anywhere in the file are also regarded as comment lines and are ignored. (3) Use the 'fasta-blast' format. This format regards any lines starting with '!', '#', or ';' as comment lines. The 'fasta-blast' format may be safer than the 'fasta-pearson' format, as it explicitly indicates which lines are comments. warnings.warn( 2025-11-17 05:42:17 ERROR: The input file does not contain nucleotide sequences. 2025-11-17 05:42:17 ERROR: BUSCO analysis failed! 2025-11-17 05:42:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
4ERROR: Input file is empty.
Show full stderrERROR: Input file is empty. ERROR: BUSCO analysis failed ! ERROR: Check the logs, read the user guide, and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
32025-11-13 01:35:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 01:35:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz' 2025-11-13 01:35:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz' 2025-11-13 01:35:33 ERROR: BUSCO analysis failed! 2025-11-13 01:35:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
32025-12-18 09:16:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 09:16:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 09:16:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 09:16:44 ERROR: BUSCO analysis failed! 2025-12-18 09:16:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-03 04:48:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-03 04:48:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 04:48:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 04:48:10 ERROR: BUSCO analysis failed! 2025-11-03 04:48:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-06 12:10:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 12:10:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:10:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:10:47 ERROR: BUSCO analysis failed! 2025-11-06 12:10:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-14 03:27:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:27:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:27:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:27:38 ERROR: BUSCO analysis failed! 2025-11-14 03:27:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-14 04:23:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:23:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:23:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:23:43 ERROR: BUSCO analysis failed! 2025-11-14 04:23:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-14 04:03:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:03:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:03:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:03:10 ERROR: BUSCO analysis failed! 2025-11-14 04:03:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-14 04:58:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:58:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:58:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:58:09 ERROR: BUSCO analysis failed! 2025-11-14 04:58:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-14 22:32:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:32:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:32:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:32:10 ERROR: BUSCO analysis failed! 2025-11-14 22:32:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-14 22:29:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:29:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:29:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:29:18 ERROR: BUSCO analysis failed! 2025-11-14 22:29:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-14 17:29:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 17:29:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:29:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:29:41 ERROR: BUSCO analysis failed! 2025-11-14 17:29:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-17 03:05:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 03:05:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:05:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:05:40 ERROR: BUSCO analysis failed! 2025-11-17 03:05:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-17 03:19:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 03:19:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:19:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:19:49 ERROR: BUSCO analysis failed! 2025-11-17 03:19:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-18 08:58:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 08:58:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:58:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:58:13 ERROR: BUSCO analysis failed! 2025-11-18 08:58:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-18 11:40:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:40:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:40:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:40:46 ERROR: BUSCO analysis failed! 2025-11-18 11:40:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-18 09:46:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:46:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:46:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:46:40 ERROR: BUSCO analysis failed! 2025-11-18 09:46:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-18 10:49:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:49:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:49:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:49:47 ERROR: BUSCO analysis failed! 2025-11-18 10:49:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-18 09:50:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:50:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:50:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:50:42 ERROR: BUSCO analysis failed! 2025-11-18 09:50:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-18 14:43:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:43:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:43:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:43:42 ERROR: BUSCO analysis failed! 2025-11-18 14:43:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-20 11:30:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 11:30:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 11:30:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 11:30:51 ERROR: BUSCO analysis failed! 2025-11-20 11:30:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-22 22:57:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 22:57:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 22:57:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 22:57:02 ERROR: BUSCO analysis failed! 2025-11-22 22:57:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-23 07:39:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:39:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:39:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:39:32 ERROR: BUSCO analysis failed! 2025-11-23 07:39:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-23 02:57:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:57:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:57:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:57:33 ERROR: BUSCO analysis failed! 2025-11-23 02:57:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-23 02:52:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:52:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:52:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:52:21 ERROR: BUSCO analysis failed! 2025-11-23 02:52:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-23 08:28:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:28:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:28:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:28:17 ERROR: BUSCO analysis failed! 2025-11-23 08:28:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-24 02:27:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:27:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:27:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:27:46 ERROR: BUSCO analysis failed! 2025-11-24 02:27:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-24 09:39:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 09:39:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:39:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:39:54 ERROR: BUSCO analysis failed! 2025-11-24 09:39:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-24 12:40:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 12:40:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 12:40:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 12:40:52 ERROR: BUSCO analysis failed! 2025-11-24 12:40:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-24 09:52:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 09:52:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:52:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:52:54 ERROR: BUSCO analysis failed! 2025-11-24 09:52:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-24 10:31:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:31:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:31:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:31:38 ERROR: BUSCO analysis failed! 2025-11-24 10:31:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-11-24 10:12:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:12:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:12:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:12:22 ERROR: BUSCO analysis failed! 2025-11-24 10:12:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
2ERROR: Prodigal did not recognize any genes matching the dataset enterobacterales_odb10 in
Show full stderrERROR: Prodigal did not recognize any genes matching the dataset enterobacterales_odb10 in the input file. If this is unexpected, check your input file and your installation of Prodigal ERROR: BUSCO analysis failed ! ERROR: Check the logs, read the user guide, and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-12-01 17:07:48 ERROR: Please provide a protein file as input
Show full stderr2025-12-01 17:07:48 ERROR: Please provide a protein file as input 2025-12-01 17:07:48 ERROR: BUSCO analysis failed! 2025-12-01 17:07:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-12-04 05:53:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 05:53:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 05:53:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 05:53:28 ERROR: BUSCO analysis failed! 2025-12-04 05:53:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-12-07 00:11:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-07 00:11:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 00:11:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 00:11:33 ERROR: BUSCO analysis failed! 2025-12-07 00:11:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-12-09 10:45:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 10:45:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 10:45:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 10:45:00 ERROR: BUSCO analysis failed! 2025-12-09 10:45:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-12-09 10:44:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 10:44:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 10:44:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 10:44:59 ERROR: BUSCO analysis failed! 2025-12-09 10:44:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-12-14 00:41:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-14 00:41:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 00:41:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 00:41:39 ERROR: BUSCO analysis failed! 2025-12-14 00:41:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-12-14 16:27:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-14 16:27:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 16:27:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 16:27:59 ERROR: BUSCO analysis failed! 2025-12-14 16:27:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-12-14 16:30:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-14 16:30:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 16:30:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 16:30:15 ERROR: BUSCO analysis failed! 2025-12-14 16:30:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
22025-12-18 04:17:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 04:17:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 04:17:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 04:17:25 ERROR: BUSCO analysis failed! 2025-12-18 04:17:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-01 12:27:13 ERROR: Unable to find single copy BUSCO gene in Augustus output.
Show full stderr2025-11-01 12:27:13 ERROR: Unable to find single copy BUSCO gene in Augustus output. 2025-11-01 12:27:13 ERROR: BUSCO analysis failed! 2025-11-01 12:27:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-01 16:45:48 ERROR: Unable to find single copy BUSCO gene in Augustus output.
Show full stderr2025-11-01 16:45:48 ERROR: Unable to find single copy BUSCO gene in Augustus output. 2025-11-01 16:45:48 ERROR: BUSCO analysis failed! 2025-11-01 16:45:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-01 12:57:47 ERROR: Unable to find single copy BUSCO gene in Augustus output.
Show full stderr2025-11-01 12:57:47 ERROR: Unable to find single copy BUSCO gene in Augustus output. 2025-11-01 12:57:47 ERROR: BUSCO analysis failed! 2025-11-01 12:57:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-01 17:24:41 ERROR: Unable to find single copy BUSCO gene in Augustus output.
Show full stderr2025-11-01 17:24:41 ERROR: Unable to find single copy BUSCO gene in Augustus output. 2025-11-01 17:24:41 ERROR: BUSCO analysis failed! 2025-11-01 17:24:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-01 21:23:36 ERROR: Unable to find single copy BUSCO gene in Augustus output.
Show full stderr2025-11-01 21:23:36 ERROR: Unable to find single copy BUSCO gene in Augustus output. 2025-11-01 21:23:36 ERROR: BUSCO analysis failed! 2025-11-01 21:23:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-01 21:55:52 ERROR: Unable to find single copy BUSCO gene in Augustus output.
Show full stderr2025-11-01 21:55:52 ERROR: Unable to find single copy BUSCO gene in Augustus output. 2025-11-01 21:55:52 ERROR: BUSCO analysis failed! 2025-11-01 21:55:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 00:31:44 ERROR: Please provide a protein file as input
Show full stderr2025-11-03 00:31:44 ERROR: Please provide a protein file as input 2025-11-03 00:31:44 ERROR: BUSCO analysis failed! 2025-11-03 00:31:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 01:12:29 ERROR: Please provide a protein file as input
Show full stderr2025-11-03 01:12:29 ERROR: Please provide a protein file as input 2025-11-03 01:12:29 ERROR: BUSCO analysis failed! 2025-11-03 01:12:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/anvil/scratch/x-xcgalaxy/main/staging/72141191/tool_script.sh: line 23: 48 Killed
Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72141191/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'liliopsida_odb10' --miniprot
12025-11-02 19:55:02 ERROR: Unable to find single copy BUSCO gene in Augustus output.
Show full stderr2025-11-02 19:55:02 ERROR: Unable to find single copy BUSCO gene in Augustus output. 2025-11-02 19:55:02 ERROR: BUSCO analysis failed! 2025-11-02 19:55:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 03:23:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-03 03:23:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 03:23:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 03:23:42 ERROR: BUSCO analysis failed! 2025-11-03 03:23:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-02 20:39:14 ERROR: The character "/" is present in the fasta header >ERR638230.1/
Show full stderr2025-11-02 20:39:14 ERROR: The character "/" is present in the fasta header >ERR638230.1/1, which will crash Reader. Please clean the header of your input file. 2025-11-02 20:39:14 ERROR: BUSCO analysis failed! 2025-11-02 20:39:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-02 20:39:14 ERROR: The character "/" is present in the fasta header >ERR638228.3/
Show full stderr2025-11-02 20:39:14 ERROR: The character "/" is present in the fasta header >ERR638228.3/1, which will crash Reader. Please clean the header of your input file. 2025-11-02 20:39:14 ERROR: BUSCO analysis failed! 2025-11-02 20:39:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-02 23:40:06 ERROR: The character "/" is present in the fasta header >ERR638227.1/
Show full stderr2025-11-02 23:40:06 ERROR: The character "/" is present in the fasta header >ERR638227.1/1, which will crash Reader. Please clean the header of your input file. 2025-11-02 23:40:06 ERROR: BUSCO analysis failed! 2025-11-02 23:40:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 04:38:47 ERROR: The character "/" is present in the fasta header >ERR638225.1/
Show full stderr2025-11-03 04:38:47 ERROR: The character "/" is present in the fasta header >ERR638225.1/1, which will crash Reader. Please clean the header of your input file. 2025-11-03 04:38:47 ERROR: BUSCO analysis failed! 2025-11-03 04:38:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 04:38:50 ERROR: The character "/" is present in the fasta header >ERR638229.1/
Show full stderr2025-11-03 04:38:50 ERROR: The character "/" is present in the fasta header >ERR638229.1/1, which will crash Reader. Please clean the header of your input file. 2025-11-03 04:38:50 ERROR: BUSCO analysis failed! 2025-11-03 04:38:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 04:38:47 ERROR: The character "/" is present in the fasta header >ERR638226.3/
Show full stderr2025-11-03 04:38:47 ERROR: The character "/" is present in the fasta header >ERR638226.3/1, which will crash Reader. Please clean the header of your input file. 2025-11-03 04:38:47 ERROR: BUSCO analysis failed! 2025-11-03 04:38:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 04:46:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-03 04:46:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 04:46:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 04:46:14 ERROR: BUSCO analysis failed! 2025-11-03 04:46:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 01:42:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-03 01:42:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 01:42:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 01:42:24 ERROR: BUSCO analysis failed! 2025-11-03 01:42:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 04:44:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-03 04:44:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 04:44:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 04:44:09 ERROR: BUSCO analysis failed! 2025-11-03 04:44:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 04:46:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-03 04:46:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 04:46:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 04:46:13 ERROR: BUSCO analysis failed! 2025-11-03 04:46:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 04:48:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-03 04:48:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 04:48:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 04:48:17 ERROR: BUSCO analysis failed! 2025-11-03 04:48:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/ocean/projects/mcb140028p/xcgalaxy/main/staging/72163715/tool_script.sh: line 23: 45 Kill
Show full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72163715/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'liliopsida_odb10' --miniprot
1/ocean/projects/mcb140028p/xcgalaxy/main/staging/72170966/tool_script.sh: line 23: 45 Kill
Show full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72170966/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'endopterygota_odb10' --miniprot
1/ocean/projects/mcb140028p/xcgalaxy/main/staging/72170969/tool_script.sh: line 23: 45 Kill
Show full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72170969/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'endopterygota_odb10' --miniprot
12025-11-03 22:26:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-03 22:26:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 22:26:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 22:26:26 ERROR: BUSCO analysis failed! 2025-11-03 22:26:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-04 01:30:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-04 01:30:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-04 01:30:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-04 01:30:07 ERROR: BUSCO analysis failed! 2025-11-04 01:30:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-03 23:05:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-03 23:05:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 23:05:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-03 23:05:48 ERROR: BUSCO analysis failed! 2025-11-03 23:05:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-04 02:11:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-04 02:11:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-04 02:11:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-04 02:11:57 ERROR: BUSCO analysis failed! 2025-11-04 02:11:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/anvil/scratch/x-xcgalaxy/main/staging/72189967/tool_script.sh: line 23: 48 Killed
Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72189967/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72190438/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72190438/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
12025-11-04 04:09:11 ERROR: The character "/" is present in the fasta header >F01_cb10137_
Show full stderr2025-11-04 04:09:11 ERROR: The character "/" is present in the fasta header >F01_cb10137_c132110/f1p0/2560, which will crash Reader. Please clean the header of your input file. 2025-11-04 04:09:11 ERROR: BUSCO analysis failed! 2025-11-04 04:09:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-04 04:11:48 ERROR: The character "/" is present in the fasta header >F01_cb10044_
Show full stderr2025-11-04 04:11:48 ERROR: The character "/" is present in the fasta header >F01_cb10044_c11/f1p0/7240, which will crash Reader. Please clean the header of your input file. 2025-11-04 04:11:48 ERROR: BUSCO analysis failed! 2025-11-04 04:11:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-04 04:15:45 ERROR: The character "/" is present in the fasta header >F01_cb10137_
Show full stderr2025-11-04 04:15:45 ERROR: The character "/" is present in the fasta header >F01_cb10137_c132110/f1p0/2560, which will crash Reader. Please clean the header of your input file. 2025-11-04 04:15:45 ERROR: BUSCO analysis failed! 2025-11-04 04:15:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/anvil/scratch/x-xcgalaxy/main/staging/72195986/tool_script.sh: line 23: 48 Killed
Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72195986/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot
12025-11-04 09:01:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-04 09:01:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-04 09:01:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-04 09:01:23 ERROR: BUSCO analysis failed! 2025-11-04 09:01:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-04 11:08:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-04 11:08:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-04 11:08:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-04 11:08:01 ERROR: BUSCO analysis failed! 2025-11-04 11:08:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-04 12:45:40 ERROR: No genes were recognized by BUSCO. Please check the content o
Show full stderr2025-11-04 12:45:40 ERROR: No genes were recognized by BUSCO. Please check the content of your input file. 2025-11-04 12:45:40 ERROR: BUSCO analysis failed! 2025-11-04 12:45:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-04 13:45:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-04 13:45:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-04 13:45:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-04 13:45:54 ERROR: BUSCO analysis failed! 2025-11-04 13:45:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-04 10:52:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-04 10:52:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-04 10:52:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-04 10:52:18 ERROR: BUSCO analysis failed! 2025-11-04 10:52:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 08:04:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-05 08:04:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-05 08:04:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-05 08:04:18 ERROR: BUSCO analysis failed! 2025-11-05 08:04:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 08:26:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-05 08:26:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-05 08:26:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-05 08:26:47 ERROR: BUSCO analysis failed! 2025-11-05 08:26:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 03:46:41 ERROR: The character "/" is present in the fasta header >F01_cb10044_
Show full stderr2025-11-05 03:46:41 ERROR: The character "/" is present in the fasta header >F01_cb10044_c11/f1p0/7240, which will crash Reader. Please clean the header of your input file. 2025-11-05 03:46:41 ERROR: BUSCO analysis failed! 2025-11-05 03:46:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/anvil/scratch/x-xcgalaxy/main/staging/72216397/tool_script.sh: line 23: 48 Killed
Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72216397/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'ascomycota_odb10' --miniprot
12025-11-05 11:32:58 ERROR: Please provide a protein file as input
Show full stderr2025-11-05 11:32:58 ERROR: Please provide a protein file as input 2025-11-05 11:32:58 ERROR: BUSCO analysis failed! 2025-11-05 11:32:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 11:22:52 ERROR: Please provide a protein file as input
Show full stderr2025-11-05 11:22:52 ERROR: Please provide a protein file as input 2025-11-05 11:22:52 ERROR: BUSCO analysis failed! 2025-11-05 11:22:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 11:37:52 ERROR: Please provide a protein file as input
Show full stderr2025-11-05 11:37:52 ERROR: Please provide a protein file as input 2025-11-05 11:37:52 ERROR: BUSCO analysis failed! 2025-11-05 11:37:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 12:17:53 ERROR: Please provide a protein file as input
Show full stderr2025-11-05 12:17:53 ERROR: Please provide a protein file as input 2025-11-05 12:17:53 ERROR: BUSCO analysis failed! 2025-11-05 12:17:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 20:09:45 ERROR: Please provide a protein file as input
Show full stderr2025-11-05 20:09:45 ERROR: Please provide a protein file as input 2025-11-05 20:09:45 ERROR: BUSCO analysis failed! 2025-11-05 20:09:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 21:21:42 ERROR: Please provide a protein file as input
Show full stderr2025-11-05 21:21:42 ERROR: Please provide a protein file as input 2025-11-05 21:21:42 ERROR: BUSCO analysis failed! 2025-11-05 21:21:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 20:56:15 ERROR: Please provide a protein file as input
Show full stderr2025-11-05 20:56:15 ERROR: Please provide a protein file as input 2025-11-05 20:56:15 ERROR: BUSCO analysis failed! 2025-11-05 20:56:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 21:37:12 ERROR: Please provide a protein file as input
Show full stderr2025-11-05 21:37:12 ERROR: Please provide a protein file as input 2025-11-05 21:37:12 ERROR: BUSCO analysis failed! 2025-11-05 21:37:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/ocean/projects/mcb140028p/xcgalaxy/main/staging/72228320/tool_script.sh: line 23: 45 Kill
Show full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72228320/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'ascomycota_odb10' --miniprot
12025-11-05 09:08:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-05 09:08:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-05 09:08:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-05 09:08:55 ERROR: BUSCO analysis failed! 2025-11-05 09:08:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 14:16:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-05 14:16:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-05 14:16:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-05 14:16:36 ERROR: BUSCO analysis failed! 2025-11-05 14:16:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 09:24:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-05 09:24:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteroidia_odb10/refseq_db.faa.gz' 2025-11-05 09:24:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteroidia_odb10/refseq_db.faa.gz' 2025-11-05 09:24:12 ERROR: BUSCO analysis failed! 2025-11-05 09:24:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 05:58:30 ERROR: Please provide a protein file as input
Show full stderr2025-11-06 05:58:30 ERROR: Please provide a protein file as input 2025-11-06 05:58:30 ERROR: BUSCO analysis failed! 2025-11-06 05:58:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 05:58:59 ERROR: Please provide a protein file as input
Show full stderr2025-11-06 05:58:59 ERROR: Please provide a protein file as input 2025-11-06 05:58:59 ERROR: BUSCO analysis failed! 2025-11-06 05:58:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 06:00:32 ERROR: Please provide a protein file as input
Show full stderr2025-11-06 06:00:32 ERROR: Please provide a protein file as input 2025-11-06 06:00:32 ERROR: BUSCO analysis failed! 2025-11-06 06:00:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 06:40:45 ERROR: Please provide a protein file as input
Show full stderr2025-11-06 06:40:45 ERROR: Please provide a protein file as input 2025-11-06 06:40:45 ERROR: BUSCO analysis failed! 2025-11-06 06:40:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 06:29:45 ERROR: Please provide a protein file as input
Show full stderr2025-11-06 06:29:45 ERROR: Please provide a protein file as input 2025-11-06 06:29:45 ERROR: BUSCO analysis failed! 2025-11-06 06:29:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 06:29:46 ERROR: Please provide a protein file as input
Show full stderr2025-11-06 06:29:46 ERROR: Please provide a protein file as input 2025-11-06 06:29:46 ERROR: BUSCO analysis failed! 2025-11-06 06:29:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-05 19:44:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-05 19:44:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz' 2025-11-05 19:44:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz' 2025-11-05 19:44:00 ERROR: BUSCO analysis failed! 2025-11-05 19:44:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 09:22:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 09:22:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-06 09:22:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-06 09:22:22 ERROR: BUSCO analysis failed! 2025-11-06 09:22:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 04:29:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 04:29:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-06 04:29:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-06 04:29:47 ERROR: BUSCO analysis failed! 2025-11-06 04:29:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 01:29:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 01:29:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 01:29:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 01:29:43 ERROR: BUSCO analysis failed! 2025-11-06 01:29:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 09:37:43 ERROR: Please provide a protein file as input
Show full stderr2025-11-06 09:37:43 ERROR: Please provide a protein file as input 2025-11-06 09:37:43 ERROR: BUSCO analysis failed! 2025-11-06 09:37:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 09:43:31 ERROR: Please provide a protein file as input
Show full stderr2025-11-06 09:43:31 ERROR: Please provide a protein file as input 2025-11-06 09:43:31 ERROR: BUSCO analysis failed! 2025-11-06 09:43:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 06:24:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 06:24:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 06:24:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 06:24:58 ERROR: BUSCO analysis failed! 2025-11-06 06:24:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 06:24:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 06:24:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-06 06:24:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-06 06:24:57 ERROR: BUSCO analysis failed! 2025-11-06 06:24:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 06:31:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 06:31:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 06:31:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 06:31:04 ERROR: BUSCO analysis failed! 2025-11-06 06:31:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 03:38:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 03:38:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-06 03:38:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-06 03:38:33 ERROR: BUSCO analysis failed! 2025-11-06 03:38:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 12:11:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 12:11:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:11:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:11:54 ERROR: BUSCO analysis failed! 2025-11-06 12:11:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 12:18:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 12:18:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:18:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:18:23 ERROR: BUSCO analysis failed! 2025-11-06 12:18:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 07:54:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 07:54:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 07:54:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 07:54:08 ERROR: BUSCO analysis failed! 2025-11-06 07:54:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 08:00:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 08:00:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 08:00:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 08:00:14 ERROR: BUSCO analysis failed! 2025-11-06 08:00:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 16:08:31 ERROR: Please provide a protein file as input
Show full stderr2025-11-06 16:08:31 ERROR: Please provide a protein file as input 2025-11-06 16:08:31 ERROR: BUSCO analysis failed! 2025-11-06 16:08:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 16:15:29 ERROR: Please provide a protein file as input
Show full stderr2025-11-06 16:15:29 ERROR: Please provide a protein file as input 2025-11-06 16:15:29 ERROR: BUSCO analysis failed! 2025-11-06 16:15:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 12:15:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 12:15:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:15:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:15:07 ERROR: BUSCO analysis failed! 2025-11-06 12:15:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 09:09:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 09:09:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 09:09:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 09:09:29 ERROR: BUSCO analysis failed! 2025-11-06 09:09:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 12:15:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 12:15:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:15:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:15:05 ERROR: BUSCO analysis failed! 2025-11-06 12:15:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 12:24:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 12:24:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:24:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:24:45 ERROR: BUSCO analysis failed! 2025-11-06 12:24:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 12:24:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 12:24:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:24:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 12:24:46 ERROR: BUSCO analysis failed! 2025-11-06 12:24:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 13:06:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 13:06:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.9/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.9/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.9/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.9/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.9/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.9/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.9/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.9/site-packages/busco/BuscoRunner.py", line 564, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.9/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.9/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.9/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.9/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.9/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.9/gzip.py", line 173, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 13:06:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 13:06:09 ERROR: BUSCO analysis failed! 2025-11-06 13:06:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 10:58:30 ERROR: Retraining did not complete correctly. Check your Augustus conf
Show full stderr2025-11-06 10:58:30 ERROR: Retraining did not complete correctly. Check your Augustus config path environment variable. 2025-11-06 10:58:30 ERROR: BUSCO analysis failed! 2025-11-06 10:58:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-06 15:47:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-06 15:47:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 15:47:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-06 15:47:18 ERROR: BUSCO analysis failed! 2025-11-06 15:47:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-07 05:00:18 ERROR: Please provide a protein file as input
Show full stderr2025-11-07 05:00:18 ERROR: Please provide a protein file as input 2025-11-07 05:00:18 ERROR: BUSCO analysis failed! 2025-11-07 05:00:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-07 05:39:18 ERROR: Please provide a protein file as input
Show full stderr2025-11-07 05:39:18 ERROR: Please provide a protein file as input 2025-11-07 05:39:18 ERROR: BUSCO analysis failed! 2025-11-07 05:39:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-07 03:47:51 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-11-07 03:47:51 ERROR: The input file does not contain nucleotide sequences. 2025-11-07 03:47:51 ERROR: BUSCO analysis failed! 2025-11-07 03:47:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/anvil/scratch/x-xcgalaxy/main/staging/72298326/tool_script.sh: line 23: 48 Killed
Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72298326/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'endopterygota_odb10' --miniprot
12025-11-07 08:18:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-07 08:18:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-07 08:18:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-07 08:18:51 ERROR: BUSCO analysis failed! 2025-11-07 08:18:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-07 07:29:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-07 07:29:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-07 07:29:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-07 07:29:17 ERROR: BUSCO analysis failed! 2025-11-07 07:29:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72313475/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72313475/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot
12025-11-07 15:39:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-07 15:39:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-07 15:39:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-07 15:39:11 ERROR: BUSCO analysis failed! 2025-11-07 15:39:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-07 23:36:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-07 23:36:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-07 23:36:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-07 23:36:20 ERROR: BUSCO analysis failed! 2025-11-07 23:36:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-08 06:43:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-08 06:43:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-08 06:43:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-08 06:43:11 ERROR: BUSCO analysis failed! 2025-11-08 06:43:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-08 10:23:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-08 10:23:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-08 10:23:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-08 10:23:30 ERROR: BUSCO analysis failed! 2025-11-08 10:23:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72354339/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72354339/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot
12025-11-09 23:27:19 ERROR: Please provide a protein file as input
Show full stderr2025-11-09 23:27:19 ERROR: Please provide a protein file as input 2025-11-09 23:27:19 ERROR: BUSCO analysis failed! 2025-11-09 23:27:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-09 23:50:41 ERROR: Please provide a protein file as input
Show full stderr2025-11-09 23:50:41 ERROR: Please provide a protein file as input 2025-11-09 23:50:41 ERROR: BUSCO analysis failed! 2025-11-09 23:50:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-09 21:01:32 ERROR: The character "/" is present in the fasta header >LH00221:477:
Show full stderr2025-11-09 21:01:32 ERROR: The character "/" is present in the fasta header >LH00221:477:237NWYLT4:3:1101:1000:7698/1, which will crash Reader. Please clean the header of your input file. 2025-11-09 21:01:32 ERROR: BUSCO analysis failed! 2025-11-09 21:01:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-09 20:58:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-09 20:58:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-09 20:58:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-09 20:58:57 ERROR: BUSCO analysis failed! 2025-11-09 20:58:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 02:16:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 02:16:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 02:16:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 02:16:03 ERROR: BUSCO analysis failed! 2025-11-10 02:16:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 10:17:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 10:17:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 10:17:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 10:17:50 ERROR: BUSCO analysis failed! 2025-11-10 10:17:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 05:17:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 05:17:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 05:17:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 05:17:21 ERROR: BUSCO analysis failed! 2025-11-10 05:17:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 06:11:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 06:11:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 06:11:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 06:11:36 ERROR: BUSCO analysis failed! 2025-11-10 06:11:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 03:11:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 03:11:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 03:11:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 03:11:36 ERROR: BUSCO analysis failed! 2025-11-10 03:11:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 11:18:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 11:18:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 11:18:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 11:18:57 ERROR: BUSCO analysis failed! 2025-11-10 11:18:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 07:10:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 07:10:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 07:10:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 07:10:54 ERROR: BUSCO analysis failed! 2025-11-10 07:10:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 12:21:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 12:21:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 12:21:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 12:21:27 ERROR: BUSCO analysis failed! 2025-11-10 12:21:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 13:31:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 13:31:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 13:31:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 13:31:30 ERROR: BUSCO analysis failed! 2025-11-10 13:31:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 05:42:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 05:42:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 05:42:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-10 05:42:30 ERROR: BUSCO analysis failed! 2025-11-10 05:42:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 13:49:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 13:49:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 13:49:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 13:49:02 ERROR: BUSCO analysis failed! 2025-11-10 13:49:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 13:53:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 13:53:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-10 13:53:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-10 13:53:28 ERROR: BUSCO analysis failed! 2025-11-10 13:53:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 14:08:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 14:08:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 14:08:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 14:08:34 ERROR: BUSCO analysis failed! 2025-11-10 14:08:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 17:33:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 17:33:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 17:33:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 17:33:27 ERROR: BUSCO analysis failed! 2025-11-10 17:33:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 17:49:31 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 17:49:31 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 17:49:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 17:49:31 ERROR: BUSCO analysis failed! 2025-11-10 17:49:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 18:25:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 18:25:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 18:25:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 18:25:10 ERROR: BUSCO analysis failed! 2025-11-10 18:25:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 21:38:51 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-11-10 21:38:51 ERROR: The input file does not contain nucleotide sequences. 2025-11-10 21:38:51 ERROR: BUSCO analysis failed! 2025-11-10 21:38:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-10 18:52:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-10 18:52:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 18:52:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-10 18:52:07 ERROR: BUSCO analysis failed! 2025-11-10 18:52:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-11 01:30:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-11 01:30:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 01:30:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 01:30:07 ERROR: BUSCO analysis failed! 2025-11-11 01:30:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/jetstream2/scratch/main/jobs-vgp/72406474/tool_script.sh: line 23: 77 Killed
Show full stderr/jetstream2/scratch/main/jobs-vgp/72406474/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot
1/jetstream2/scratch/main/jobs-vgp/72406822/tool_script.sh: line 23: 77 Killed
Show full stderr/jetstream2/scratch/main/jobs-vgp/72406822/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot
12025-11-11 03:52:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-11 03:52:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-11 03:52:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-11 03:52:06 ERROR: BUSCO analysis failed! 2025-11-11 03:52:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-11 05:43:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-11 05:43:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 05:43:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 05:43:41 ERROR: BUSCO analysis failed! 2025-11-11 05:43:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-11 06:17:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-11 06:17:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 06:17:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 06:17:18 ERROR: BUSCO analysis failed! 2025-11-11 06:17:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72417452/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72417452/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot
12025-11-11 23:06:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-11 23:06:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 23:06:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 23:06:32 ERROR: BUSCO analysis failed! 2025-11-11 23:06:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-11 23:17:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-11 23:17:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 23:17:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 23:17:04 ERROR: BUSCO analysis failed! 2025-11-11 23:17:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-11 23:35:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-11 23:35:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 23:35:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-11 23:35:59 ERROR: BUSCO analysis failed! 2025-11-11 23:35:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 04:51:52 ERROR: No genes were recognized by BUSCO. Please check the content o
Show full stderr2025-11-12 04:51:52 ERROR: No genes were recognized by BUSCO. Please check the content of your input file. 2025-11-12 04:51:52 ERROR: BUSCO analysis failed! 2025-11-12 04:51:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 01:56:08 ERROR: No genes were recognized by BUSCO. Please check the content o
Show full stderr2025-11-12 01:56:08 ERROR: No genes were recognized by BUSCO. Please check the content of your input file. 2025-11-12 01:56:08 ERROR: BUSCO analysis failed! 2025-11-12 01:56:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 01:56:07 ERROR: No genes were recognized by BUSCO. Please check the content o
Show full stderr2025-11-12 01:56:07 ERROR: No genes were recognized by BUSCO. Please check the content of your input file. 2025-11-12 01:56:07 ERROR: BUSCO analysis failed! 2025-11-12 01:56:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 07:17:59 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-11-12 07:17:59 ERROR: The input file does not contain nucleotide sequences. 2025-11-12 07:17:59 ERROR: BUSCO analysis failed! 2025-11-12 07:17:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 05:00:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 05:00:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 05:00:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 05:00:41 ERROR: BUSCO analysis failed! 2025-11-12 05:00:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 13:12:58 ERROR: No genes were recognized by BUSCO. Please check the content o
Show full stderr2025-11-12 13:12:58 ERROR: No genes were recognized by BUSCO. Please check the content of your input file. 2025-11-12 13:12:58 ERROR: BUSCO analysis failed! 2025-11-12 13:12:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 14:57:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 14:57:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-12 14:57:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-12 14:57:44 ERROR: BUSCO analysis failed! 2025-11-12 14:57:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 18:17:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 18:17:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 18:17:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 18:17:10 ERROR: BUSCO analysis failed! 2025-11-12 18:17:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 13:34:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 13:34:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 13:34:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 13:34:29 ERROR: BUSCO analysis failed! 2025-11-12 13:34:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 13:34:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 13:34:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 13:34:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 13:34:34 ERROR: BUSCO analysis failed! 2025-11-12 13:34:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 18:32:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 18:32:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 18:32:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 18:32:14 ERROR: BUSCO analysis failed! 2025-11-12 18:32:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 18:32:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 18:32:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 18:32:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 18:32:13 ERROR: BUSCO analysis failed! 2025-11-12 18:32:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 18:32:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 18:32:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 18:32:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 18:32:15 ERROR: BUSCO analysis failed! 2025-11-12 18:32:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 18:32:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 18:32:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 18:32:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 18:32:07 ERROR: BUSCO analysis failed! 2025-11-12 18:32:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 13:34:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 13:34:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 13:34:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 13:34:43 ERROR: BUSCO analysis failed! 2025-11-12 13:34:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 13:42:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 13:42:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 13:42:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 13:42:11 ERROR: BUSCO analysis failed! 2025-11-12 13:42:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 13:42:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 13:42:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 13:42:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-12 13:42:32 ERROR: BUSCO analysis failed! 2025-11-12 13:42:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-12 18:39:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-12 18:39:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-12 18:39:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-12 18:39:42 ERROR: BUSCO analysis failed! 2025-11-12 18:39:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 01:51:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 01:51:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-13 01:51:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-13 01:51:42 ERROR: BUSCO analysis failed! 2025-11-13 01:51:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 01:51:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 01:51:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-13 01:51:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-13 01:51:41 ERROR: BUSCO analysis failed! 2025-11-13 01:51:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 07:02:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 07:02:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz' 2025-11-13 07:02:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz' 2025-11-13 07:02:46 ERROR: BUSCO analysis failed! 2025-11-13 07:02:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 07:34:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 07:34:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 07:34:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 07:34:45 ERROR: BUSCO analysis failed! 2025-11-13 07:34:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 03:13:35 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 03:13:35 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-13 03:13:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-13 03:13:35 ERROR: BUSCO analysis failed! 2025-11-13 03:13:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 08:21:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 08:21:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-13 08:21:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-13 08:21:16 ERROR: BUSCO analysis failed! 2025-11-13 08:21:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72481253/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72481253/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot
12025-11-13 10:30:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 10:30:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 10:30:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 10:30:44 ERROR: BUSCO analysis failed! 2025-11-13 10:30:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 10:37:49 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-11-13 10:37:49 ERROR: The input file does not contain nucleotide sequences. 2025-11-13 10:37:49 ERROR: BUSCO analysis failed! 2025-11-13 10:37:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 13:20:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 13:20:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 13:20:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 13:20:08 ERROR: BUSCO analysis failed! 2025-11-13 13:20:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 11:57:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 11:57:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 11:57:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 11:57:15 ERROR: BUSCO analysis failed! 2025-11-13 11:57:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 14:57:31 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 14:57:31 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 14:57:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 14:57:31 ERROR: BUSCO analysis failed! 2025-11-13 14:57:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 15:21:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 15:21:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 15:21:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 15:21:11 ERROR: BUSCO analysis failed! 2025-11-13 15:21:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-13 15:31:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-13 15:31:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 15:31:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-13 15:31:29 ERROR: BUSCO analysis failed! 2025-11-13 15:31:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 08:37:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 08:37:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 08:37:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 08:37:44 ERROR: BUSCO analysis failed! 2025-11-14 08:37:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 03:43:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:43:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:43:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:43:14 ERROR: BUSCO analysis failed! 2025-11-14 03:43:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 08:44:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 08:44:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 08:44:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 08:44:36 ERROR: BUSCO analysis failed! 2025-11-14 08:44:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 03:45:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:45:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:45:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:45:32 ERROR: BUSCO analysis failed! 2025-11-14 03:45:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 08:46:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 08:46:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 08:46:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 08:46:03 ERROR: BUSCO analysis failed! 2025-11-14 08:46:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 03:48:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:48:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:48:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:48:01 ERROR: BUSCO analysis failed! 2025-11-14 03:48:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 03:48:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:48:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:48:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:48:53 ERROR: BUSCO analysis failed! 2025-11-14 03:48:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 03:50:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:50:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:50:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:50:22 ERROR: BUSCO analysis failed! 2025-11-14 03:50:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 00:52:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 00:52:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 00:52:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 00:52:57 ERROR: BUSCO analysis failed! 2025-11-14 00:52:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 03:53:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:53:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:53:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:53:04 ERROR: BUSCO analysis failed! 2025-11-14 03:53:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 00:53:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 00:53:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 00:53:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 00:53:55 ERROR: BUSCO analysis failed! 2025-11-14 00:53:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 00:56:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 00:56:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 00:56:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 00:56:58 ERROR: BUSCO analysis failed! 2025-11-14 00:56:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 03:53:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:53:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:53:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:53:01 ERROR: BUSCO analysis failed! 2025-11-14 03:53:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 03:56:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:56:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:56:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:56:29 ERROR: BUSCO analysis failed! 2025-11-14 03:56:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 08:49:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 08:49:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 08:49:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 08:49:42 ERROR: BUSCO analysis failed! 2025-11-14 08:49:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 03:57:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:57:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:57:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:57:07 ERROR: BUSCO analysis failed! 2025-11-14 03:57:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:01:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:01:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:01:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:01:01 ERROR: BUSCO analysis failed! 2025-11-14 01:01:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 08:55:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 08:55:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 08:55:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 08:55:43 ERROR: BUSCO analysis failed! 2025-11-14 08:55:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:06:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:06:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:06:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:06:07 ERROR: BUSCO analysis failed! 2025-11-14 01:06:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 03:59:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:59:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:59:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:59:01 ERROR: BUSCO analysis failed! 2025-11-14 03:59:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:09:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:09:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:09:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:09:42 ERROR: BUSCO analysis failed! 2025-11-14 04:09:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:20:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:20:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:20:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:20:20 ERROR: BUSCO analysis failed! 2025-11-14 01:20:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:09:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:09:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:09:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:09:32 ERROR: BUSCO analysis failed! 2025-11-14 04:09:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 09:08:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 09:08:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 09:08:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 09:08:42 ERROR: BUSCO analysis failed! 2025-11-14 09:08:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:24:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:24:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:24:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:24:22 ERROR: BUSCO analysis failed! 2025-11-14 01:24:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:26:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:26:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:26:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:26:24 ERROR: BUSCO analysis failed! 2025-11-14 04:26:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:26:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:26:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:26:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:26:32 ERROR: BUSCO analysis failed! 2025-11-14 04:26:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:28:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:28:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:28:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:28:49 ERROR: BUSCO analysis failed! 2025-11-14 04:28:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:01:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:01:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:01:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:01:02 ERROR: BUSCO analysis failed! 2025-11-14 01:01:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:04:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:04:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:04:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:04:19 ERROR: BUSCO analysis failed! 2025-11-14 04:04:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:05:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:05:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:05:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:05:39 ERROR: BUSCO analysis failed! 2025-11-14 04:05:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:12:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:12:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:12:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:12:54 ERROR: BUSCO analysis failed! 2025-11-14 04:12:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:15:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:15:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:15:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:15:09 ERROR: BUSCO analysis failed! 2025-11-14 04:15:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:15:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:15:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:15:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:15:44 ERROR: BUSCO analysis failed! 2025-11-14 04:15:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:19:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:19:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:19:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:19:45 ERROR: BUSCO analysis failed! 2025-11-14 04:19:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:16:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:16:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:16:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:16:15 ERROR: BUSCO analysis failed! 2025-11-14 01:16:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:21:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:21:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:21:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:21:34 ERROR: BUSCO analysis failed! 2025-11-14 04:21:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:35:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:35:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:35:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:35:38 ERROR: BUSCO analysis failed! 2025-11-14 04:35:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:54:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:54:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:54:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:54:13 ERROR: BUSCO analysis failed! 2025-11-14 04:54:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:24:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:24:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:24:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:24:24 ERROR: BUSCO analysis failed! 2025-11-14 01:24:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:27:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:27:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:27:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:27:38 ERROR: BUSCO analysis failed! 2025-11-14 04:27:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:06:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:06:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:06:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:06:05 ERROR: BUSCO analysis failed! 2025-11-14 01:06:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:12:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:12:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:12:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:12:11 ERROR: BUSCO analysis failed! 2025-11-14 01:12:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:12:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:12:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:12:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:12:10 ERROR: BUSCO analysis failed! 2025-11-14 01:12:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 03:59:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 03:59:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:59:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 03:59:42 ERROR: BUSCO analysis failed! 2025-11-14 03:59:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:07:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:07:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:07:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:07:06 ERROR: BUSCO analysis failed! 2025-11-14 04:07:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:08:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:08:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:08:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:08:22 ERROR: BUSCO analysis failed! 2025-11-14 04:08:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:17:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:17:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:17:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:17:15 ERROR: BUSCO analysis failed! 2025-11-14 01:17:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:12:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:12:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:12:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:12:24 ERROR: BUSCO analysis failed! 2025-11-14 04:12:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:17:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:17:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:17:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:17:49 ERROR: BUSCO analysis failed! 2025-11-14 04:17:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:21:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:21:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:21:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:21:37 ERROR: BUSCO analysis failed! 2025-11-14 04:21:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:27:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:27:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:27:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:27:39 ERROR: BUSCO analysis failed! 2025-11-14 04:27:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:36:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:36:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:36:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:36:46 ERROR: BUSCO analysis failed! 2025-11-14 04:36:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:39:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:39:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:39:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:39:27 ERROR: BUSCO analysis failed! 2025-11-14 04:39:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:42:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:42:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:42:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:42:08 ERROR: BUSCO analysis failed! 2025-11-14 04:42:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:34:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:34:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:34:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:34:32 ERROR: BUSCO analysis failed! 2025-11-14 01:34:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:37:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:37:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:37:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:37:34 ERROR: BUSCO analysis failed! 2025-11-14 01:37:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:29:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:29:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:29:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:29:09 ERROR: BUSCO analysis failed! 2025-11-14 04:29:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:31:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:31:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:31:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:31:46 ERROR: BUSCO analysis failed! 2025-11-14 04:31:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:31:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:31:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:31:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:31:43 ERROR: BUSCO analysis failed! 2025-11-14 04:31:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:30:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:30:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:30:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:30:30 ERROR: BUSCO analysis failed! 2025-11-14 01:30:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:32:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:32:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:32:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:32:32 ERROR: BUSCO analysis failed! 2025-11-14 01:32:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:33:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:33:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:33:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:33:04 ERROR: BUSCO analysis failed! 2025-11-14 04:33:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:38:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:38:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:38:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:38:03 ERROR: BUSCO analysis failed! 2025-11-14 04:38:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:44:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:44:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:44:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:44:48 ERROR: BUSCO analysis failed! 2025-11-14 04:44:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:46:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:46:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:46:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:46:05 ERROR: BUSCO analysis failed! 2025-11-14 04:46:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:47:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:47:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:47:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:47:29 ERROR: BUSCO analysis failed! 2025-11-14 04:47:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:39:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:39:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:39:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:39:36 ERROR: BUSCO analysis failed! 2025-11-14 01:39:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:49:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:49:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:49:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:49:48 ERROR: BUSCO analysis failed! 2025-11-14 04:49:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:50:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:50:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:50:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:50:08 ERROR: BUSCO analysis failed! 2025-11-14 04:50:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:44:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:44:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:44:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:44:25 ERROR: BUSCO analysis failed! 2025-11-14 04:44:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:42:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:42:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:42:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:42:39 ERROR: BUSCO analysis failed! 2025-11-14 01:42:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:54:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:54:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:54:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:54:51 ERROR: BUSCO analysis failed! 2025-11-14 04:54:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:35:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:35:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:35:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:35:32 ERROR: BUSCO analysis failed! 2025-11-14 01:35:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 02:10:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 02:10:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:10:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:10:56 ERROR: BUSCO analysis failed! 2025-11-14 02:10:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:02:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:02:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:02:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:02:20 ERROR: BUSCO analysis failed! 2025-11-14 05:02:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 02:11:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 02:11:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:11:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:11:57 ERROR: BUSCO analysis failed! 2025-11-14 02:11:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 02:13:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 02:13:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:13:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:13:58 ERROR: BUSCO analysis failed! 2025-11-14 02:13:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:04:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:04:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:04:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:04:22 ERROR: BUSCO analysis failed! 2025-11-14 05:04:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 02:14:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 02:14:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:14:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:14:59 ERROR: BUSCO analysis failed! 2025-11-14 02:14:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 02:16:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 02:16:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:16:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:16:59 ERROR: BUSCO analysis failed! 2025-11-14 02:16:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:05:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:05:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:05:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:05:49 ERROR: BUSCO analysis failed! 2025-11-14 05:05:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 02:17:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 02:17:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:17:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:17:59 ERROR: BUSCO analysis failed! 2025-11-14 02:17:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:09:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:09:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:09:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:09:27 ERROR: BUSCO analysis failed! 2025-11-14 05:09:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:13:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:13:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:13:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:13:13 ERROR: BUSCO analysis failed! 2025-11-14 05:13:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 02:20:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 02:20:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:20:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:20:01 ERROR: BUSCO analysis failed! 2025-11-14 02:20:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:17:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:17:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:17:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:17:17 ERROR: BUSCO analysis failed! 2025-11-14 05:17:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:19:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:19:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:19:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:19:53 ERROR: BUSCO analysis failed! 2025-11-14 05:19:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:20:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:20:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:20:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:20:44 ERROR: BUSCO analysis failed! 2025-11-14 05:20:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:43:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:43:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:43:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:43:24 ERROR: BUSCO analysis failed! 2025-11-14 04:43:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:40:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:40:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:40:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:40:37 ERROR: BUSCO analysis failed! 2025-11-14 01:40:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:52:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:52:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:52:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:52:29 ERROR: BUSCO analysis failed! 2025-11-14 04:52:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:47:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:47:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:47:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:47:43 ERROR: BUSCO analysis failed! 2025-11-14 01:47:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:48:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:48:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:48:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:48:03 ERROR: BUSCO analysis failed! 2025-11-14 04:48:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:52:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:52:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:52:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:52:46 ERROR: BUSCO analysis failed! 2025-11-14 04:52:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:59:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:59:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:59:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:59:50 ERROR: BUSCO analysis failed! 2025-11-14 01:59:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 02:03:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 02:03:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:03:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:03:53 ERROR: BUSCO analysis failed! 2025-11-14 02:03:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 02:06:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 02:06:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:06:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:06:55 ERROR: BUSCO analysis failed! 2025-11-14 02:06:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:00:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:00:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:00:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:00:48 ERROR: BUSCO analysis failed! 2025-11-14 05:00:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:00:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:00:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:00:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:00:49 ERROR: BUSCO analysis failed! 2025-11-14 05:00:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:03:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:03:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:03:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:03:26 ERROR: BUSCO analysis failed! 2025-11-14 05:03:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 02:06:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 02:06:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:06:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 02:06:54 ERROR: BUSCO analysis failed! 2025-11-14 02:06:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:06:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:06:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:06:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:06:50 ERROR: BUSCO analysis failed! 2025-11-14 05:06:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 05:09:31 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 05:09:31 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:09:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 05:09:31 ERROR: BUSCO analysis failed! 2025-11-14 05:09:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:55:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:55:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:55:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:55:27 ERROR: BUSCO analysis failed! 2025-11-14 04:55:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 01:43:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 01:43:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:43:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 01:43:39 ERROR: BUSCO analysis failed! 2025-11-14 01:43:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 04:44:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 04:44:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:44:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 04:44:26 ERROR: BUSCO analysis failed! 2025-11-14 04:44:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/jetstream2/scratch/main/jobs-vgp/72520540/tool_script.sh: line 23: 77 Killed
Show full stderr/jetstream2/scratch/main/jobs-vgp/72520540/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot
12025-11-14 22:29:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:29:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:29:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:29:19 ERROR: BUSCO analysis failed! 2025-11-14 22:29:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 14:30:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 14:30:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:30:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:30:01 ERROR: BUSCO analysis failed! 2025-11-14 14:30:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 17:34:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 17:34:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:34:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:34:54 ERROR: BUSCO analysis failed! 2025-11-14 17:34:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 22:32:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:32:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:32:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:32:12 ERROR: BUSCO analysis failed! 2025-11-14 22:32:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 17:33:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 17:33:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:33:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:33:44 ERROR: BUSCO analysis failed! 2025-11-14 17:33:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 17:43:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 17:43:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:43:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:43:19 ERROR: BUSCO analysis failed! 2025-11-14 17:43:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 14:36:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 14:36:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:36:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:36:14 ERROR: BUSCO analysis failed! 2025-11-14 14:36:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 14:38:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 14:38:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:38:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:38:33 ERROR: BUSCO analysis failed! 2025-11-14 14:38:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 17:35:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 17:35:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:35:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:35:47 ERROR: BUSCO analysis failed! 2025-11-14 17:35:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 14:39:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 14:39:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:39:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:39:36 ERROR: BUSCO analysis failed! 2025-11-14 14:39:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 22:40:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:40:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:40:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:40:12 ERROR: BUSCO analysis failed! 2025-11-14 22:40:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 17:44:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 17:44:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:44:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:44:04 ERROR: BUSCO analysis failed! 2025-11-14 17:44:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 22:32:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:32:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:32:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:32:15 ERROR: BUSCO analysis failed! 2025-11-14 22:32:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 14:33:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 14:33:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:33:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:33:03 ERROR: BUSCO analysis failed! 2025-11-14 14:33:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 14:42:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 14:42:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:42:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:42:52 ERROR: BUSCO analysis failed! 2025-11-14 14:42:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 22:38:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:38:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:38:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:38:41 ERROR: BUSCO analysis failed! 2025-11-14 22:38:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 17:42:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 17:42:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:42:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:42:01 ERROR: BUSCO analysis failed! 2025-11-14 17:42:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 22:44:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:44:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:44:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:44:17 ERROR: BUSCO analysis failed! 2025-11-14 22:44:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 17:34:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 17:34:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:34:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:34:53 ERROR: BUSCO analysis failed! 2025-11-14 17:34:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 14:35:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 14:35:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:35:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:35:12 ERROR: BUSCO analysis failed! 2025-11-14 14:35:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 22:35:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:35:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:35:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:35:10 ERROR: BUSCO analysis failed! 2025-11-14 22:35:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 17:39:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 17:39:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:39:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:39:57 ERROR: BUSCO analysis failed! 2025-11-14 17:39:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 22:35:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:35:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:35:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:35:11 ERROR: BUSCO analysis failed! 2025-11-14 22:35:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 17:43:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 17:43:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:43:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:43:20 ERROR: BUSCO analysis failed! 2025-11-14 17:43:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 17:37:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 17:37:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:37:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 17:37:50 ERROR: BUSCO analysis failed! 2025-11-14 17:37:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 22:38:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:38:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:38:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:38:11 ERROR: BUSCO analysis failed! 2025-11-14 22:38:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 22:41:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:41:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:41:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:41:11 ERROR: BUSCO analysis failed! 2025-11-14 22:41:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 22:41:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:41:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:41:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 22:41:41 ERROR: BUSCO analysis failed! 2025-11-14 22:41:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 14:43:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 14:43:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:43:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-14 14:43:06 ERROR: BUSCO analysis failed! 2025-11-14 14:43:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-14 22:46:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-14 22:46:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-14 22:46:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-14 22:46:48 ERROR: BUSCO analysis failed! 2025-11-14 22:46:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-15 01:39:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-15 01:39:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-15 01:39:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-15 01:39:06 ERROR: BUSCO analysis failed! 2025-11-15 01:39:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-15 06:40:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-15 06:40:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-15 06:40:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-15 06:40:18 ERROR: BUSCO analysis failed! 2025-11-15 06:40:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-15 09:28:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-15 09:28:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-15 09:28:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-15 09:28:20 ERROR: BUSCO analysis failed! 2025-11-15 09:28:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-15 09:46:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-15 09:46:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-15 09:46:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-15 09:46:30 ERROR: BUSCO analysis failed! 2025-11-15 09:46:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-15 16:27:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-15 16:27:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-15 16:27:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-15 16:27:10 ERROR: BUSCO analysis failed! 2025-11-15 16:27:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-16 01:09:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-16 01:09:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz' 2025-11-16 01:09:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz' 2025-11-16 01:09:58 ERROR: BUSCO analysis failed! 2025-11-16 01:09:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-16 06:18:02 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-11-16 06:18:02 ERROR: The input file does not contain nucleotide sequences. 2025-11-16 06:18:02 ERROR: BUSCO analysis failed! 2025-11-16 06:18:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-16 01:18:22 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-11-16 01:18:22 ERROR: The input file does not contain nucleotide sequences. 2025-11-16 01:18:22 ERROR: BUSCO analysis failed! 2025-11-16 01:18:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-15 22:30:46 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-11-15 22:30:46 ERROR: The input file does not contain nucleotide sequences. 2025-11-15 22:30:46 ERROR: BUSCO analysis failed! 2025-11-15 22:30:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-16 06:30:32 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-11-16 06:30:32 ERROR: The input file does not contain nucleotide sequences. 2025-11-16 06:30:32 ERROR: BUSCO analysis failed! 2025-11-16 06:30:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/jetstream2/scratch/main/jobs-vgp/72556786/tool_script.sh: line 23: 77 Killed
Show full stderr/jetstream2/scratch/main/jobs-vgp/72556786/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot Process SpawnPoolWorker-218: Traceback (most recent call last): File "/usr/local/lib/python3.10/multiprocessing/pool.py", line 131, in worker put((job, i, result)) File "/usr/local/lib/python3.10/multiprocessing/queues.py", line 377, in put self._writer.send_bytes(obj) File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 200, in send_bytes self._send_bytes(m[offset:offset + size]) File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 405, in _send_bytes self._send(buf) File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 368, in _send n = write(self._handle, buf) BrokenPipeError: [Errno 32] Broken pipe During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/multiprocessing/process.py", line 314, in _bootstrap self.run() File "/usr/local/lib/python3.10/multiprocessing/process.py", line 108, in run self._target(*self._args, **self._kwargs) File "/usr/local/lib/python3.10/multiprocessing/pool.py", line 136, in worker put((job, i, (False, wrapped))) File "/usr/local/lib/python3.10/multiprocessing/queues.py", line 377, in put self._writer.send_bytes(obj) File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 200, in send_bytes self._send_bytes(m[offset:offset + size]) File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 404, in _send_bytes self._send(header) File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 368, in _send n = write(self._handle, buf) BrokenPipeError: [Errno 32] Broken pipe
12025-11-16 10:14:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-16 10:14:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-16 10:14:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-16 10:14:59 ERROR: BUSCO analysis failed! 2025-11-16 10:14:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-16 21:39:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-16 21:39:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-16 21:39:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-16 21:39:48 ERROR: BUSCO analysis failed! 2025-11-16 21:39:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 03:10:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 03:10:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:10:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:10:42 ERROR: BUSCO analysis failed! 2025-11-17 03:10:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 03:13:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 03:13:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:13:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:13:30 ERROR: BUSCO analysis failed! 2025-11-17 03:13:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 03:16:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 03:16:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:16:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:16:34 ERROR: BUSCO analysis failed! 2025-11-17 03:16:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 03:21:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 03:21:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:21:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:21:34 ERROR: BUSCO analysis failed! 2025-11-17 03:21:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 03:18:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 03:18:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:18:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 03:18:08 ERROR: BUSCO analysis failed! 2025-11-17 03:18:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 03:35:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 03:35:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz' 2025-11-17 03:35:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz' 2025-11-17 03:35:40 ERROR: BUSCO analysis failed! 2025-11-17 03:35:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 08:42:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 08:42:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz' 2025-11-17 08:42:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz' 2025-11-17 08:42:44 ERROR: BUSCO analysis failed! 2025-11-17 08:42:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 09:24:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 09:24:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 09:24:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 09:24:45 ERROR: BUSCO analysis failed! 2025-11-17 09:24:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 04:33:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 04:33:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-17 04:33:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-17 04:33:03 ERROR: BUSCO analysis failed! 2025-11-17 04:33:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 09:41:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 09:41:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-17 09:41:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-17 09:41:09 ERROR: BUSCO analysis failed! 2025-11-17 09:41:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 11:29:31 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 11:29:31 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 11:29:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 11:29:31 ERROR: BUSCO analysis failed! 2025-11-17 11:29:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-17 11:33:35 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-17 11:33:35 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 11:33:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-17 11:33:35 ERROR: BUSCO analysis failed! 2025-11-17 11:33:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/jetstream2/scratch/main/jobs-vgp/72593824/tool_script.sh: line 23: 77 Killed
Show full stderr/jetstream2/scratch/main/jobs-vgp/72593824/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot
1/jetstream2/scratch/main/jobs-vgp/72593841/tool_script.sh: line 23: 77 Killed
Show full stderr/jetstream2/scratch/main/jobs-vgp/72593841/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot
12025-11-18 04:03:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 04:03:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 04:03:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 04:03:22 ERROR: BUSCO analysis failed! 2025-11-18 04:03:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:19:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:19:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:19:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:19:27 ERROR: BUSCO analysis failed! 2025-11-18 10:19:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 02:40:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 02:40:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 02:40:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 02:40:43 ERROR: BUSCO analysis failed! 2025-11-18 02:40:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 05:51:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 05:51:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 05:51:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 05:51:26 ERROR: BUSCO analysis failed! 2025-11-18 05:51:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 06:06:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 06:06:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 06:06:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 06:06:30 ERROR: BUSCO analysis failed! 2025-11-18 06:06:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:04:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:04:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:04:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:04:56 ERROR: BUSCO analysis failed! 2025-11-18 11:04:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 03:05:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 03:05:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 03:05:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 03:05:05 ERROR: BUSCO analysis failed! 2025-11-18 03:05:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:04:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:04:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:04:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:04:37 ERROR: BUSCO analysis failed! 2025-11-18 11:04:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:18:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:18:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:18:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:18:24 ERROR: BUSCO analysis failed! 2025-11-18 11:18:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:24:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:24:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-18 11:24:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-18 11:24:22 ERROR: BUSCO analysis failed! 2025-11-18 11:24:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:27:29 ERROR: Retraining did not complete correctly. Check your Augustus conf
Show full stderr2025-11-18 11:27:29 ERROR: Retraining did not complete correctly. Check your Augustus config path environment variable. 2025-11-18 11:27:29 ERROR: BUSCO analysis failed! 2025-11-18 11:27:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:31:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:31:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:31:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:31:55 ERROR: BUSCO analysis failed! 2025-11-18 11:31:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 08:57:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 08:57:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:57:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:57:28 ERROR: BUSCO analysis failed! 2025-11-18 08:57:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:55:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:55:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:55:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:55:46 ERROR: BUSCO analysis failed! 2025-11-18 13:55:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:55:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:55:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:55:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:55:58 ERROR: BUSCO analysis failed! 2025-11-18 13:55:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 09:59:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 09:59:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 09:59:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 09:59:57 ERROR: BUSCO analysis failed! 2025-12-03 09:59:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:07:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:07:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:07:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:07:28 ERROR: BUSCO analysis failed! 2025-11-18 09:07:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:02:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:02:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:02:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:02:17 ERROR: BUSCO analysis failed! 2025-11-18 09:02:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:02:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:02:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:02:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:02:19 ERROR: BUSCO analysis failed! 2025-11-18 09:02:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:04:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:04:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:04:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:04:30 ERROR: BUSCO analysis failed! 2025-11-18 09:04:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:10:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:10:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:10:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:10:57 ERROR: BUSCO analysis failed! 2025-11-18 09:10:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:04:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:04:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:04:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:04:27 ERROR: BUSCO analysis failed! 2025-11-18 09:04:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:14:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:14:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:14:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:14:27 ERROR: BUSCO analysis failed! 2025-11-18 09:14:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 08:57:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 08:57:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:57:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:57:24 ERROR: BUSCO analysis failed! 2025-11-18 08:57:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:07:31 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:07:31 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:07:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:07:31 ERROR: BUSCO analysis failed! 2025-11-18 09:07:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:00:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:00:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:00:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:00:16 ERROR: BUSCO analysis failed! 2025-11-18 09:00:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:15:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:15:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:15:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:15:17 ERROR: BUSCO analysis failed! 2025-11-18 09:15:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:19:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:19:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:19:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:19:44 ERROR: BUSCO analysis failed! 2025-11-18 09:19:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:03:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:03:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:03:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:03:24 ERROR: BUSCO analysis failed! 2025-11-18 14:03:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:23:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:23:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:23:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:23:18 ERROR: BUSCO analysis failed! 2025-11-18 09:23:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:08:31 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:08:31 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:08:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:08:31 ERROR: BUSCO analysis failed! 2025-11-18 09:08:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:36:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:36:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:36:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:36:33 ERROR: BUSCO analysis failed! 2025-11-18 09:36:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:37:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:37:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:37:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:37:37 ERROR: BUSCO analysis failed! 2025-11-18 09:37:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:11:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:11:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:11:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:11:25 ERROR: BUSCO analysis failed! 2025-11-18 09:11:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:19:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:19:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:19:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:19:12 ERROR: BUSCO analysis failed! 2025-11-18 09:19:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:28:35 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:28:35 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:28:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:28:35 ERROR: BUSCO analysis failed! 2025-11-18 09:28:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 08:58:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 08:58:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:58:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:58:15 ERROR: BUSCO analysis failed! 2025-11-18 08:58:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:28:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:28:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:28:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:28:34 ERROR: BUSCO analysis failed! 2025-11-18 09:28:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:39:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:39:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:39:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:39:37 ERROR: BUSCO analysis failed! 2025-11-18 09:39:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:00:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:00:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:00:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:00:14 ERROR: BUSCO analysis failed! 2025-11-18 09:00:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:42:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:42:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:42:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:42:39 ERROR: BUSCO analysis failed! 2025-11-18 09:42:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:47:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:47:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:47:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:47:37 ERROR: BUSCO analysis failed! 2025-11-18 09:47:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:50:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:50:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:50:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:50:46 ERROR: BUSCO analysis failed! 2025-11-18 09:50:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:54:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:54:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:54:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:54:37 ERROR: BUSCO analysis failed! 2025-11-18 09:54:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:06:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:06:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:06:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:06:28 ERROR: BUSCO analysis failed! 2025-11-18 09:06:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:24:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:24:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:24:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:24:14 ERROR: BUSCO analysis failed! 2025-11-18 09:24:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:07:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:07:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:07:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:07:32 ERROR: BUSCO analysis failed! 2025-11-18 14:07:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:08:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:08:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:08:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:08:21 ERROR: BUSCO analysis failed! 2025-11-18 14:08:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:10:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:10:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:10:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:10:32 ERROR: BUSCO analysis failed! 2025-11-18 09:10:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 13:00:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 13:00:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 13:00:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 13:00:09 ERROR: BUSCO analysis failed! 2025-12-03 13:00:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 03:42:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 03:42:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:42:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:42:48 ERROR: BUSCO analysis failed! 2025-11-20 03:42:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:32:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:32:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:32:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:32:22 ERROR: BUSCO analysis failed! 2025-11-18 09:32:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:05:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:05:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:05:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:05:23 ERROR: BUSCO analysis failed! 2025-11-18 14:05:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:58:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:58:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:58:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:58:44 ERROR: BUSCO analysis failed! 2025-11-18 09:58:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 13:02:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 13:02:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 13:02:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 13:02:49 ERROR: BUSCO analysis failed! 2025-12-03 13:02:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:58:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:58:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:58:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:58:51 ERROR: BUSCO analysis failed! 2025-11-18 09:58:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:11:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:11:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:11:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:11:24 ERROR: BUSCO analysis failed! 2025-11-18 14:11:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:13:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:13:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:13:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:13:07 ERROR: BUSCO analysis failed! 2025-11-18 09:13:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:14:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:14:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:14:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:14:45 ERROR: BUSCO analysis failed! 2025-11-18 09:14:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:14:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:14:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:14:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:14:01 ERROR: BUSCO analysis failed! 2025-11-18 14:14:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:16:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:16:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:16:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:16:44 ERROR: BUSCO analysis failed! 2025-11-18 09:16:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:18:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:18:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:18:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:18:47 ERROR: BUSCO analysis failed! 2025-11-18 09:18:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 13:00:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 13:00:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 13:00:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 13:00:12 ERROR: BUSCO analysis failed! 2025-12-03 13:00:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 03:53:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 03:53:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:53:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:53:34 ERROR: BUSCO analysis failed! 2025-11-20 03:53:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 03:57:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 03:57:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:57:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:57:27 ERROR: BUSCO analysis failed! 2025-11-20 03:57:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:17:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:17:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:17:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:17:33 ERROR: BUSCO analysis failed! 2025-11-18 14:17:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 03:50:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 03:50:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:50:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:50:26 ERROR: BUSCO analysis failed! 2025-11-20 03:50:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:00:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:00:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:00:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:00:39 ERROR: BUSCO analysis failed! 2025-11-20 04:00:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:52:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:52:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:52:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:52:51 ERROR: BUSCO analysis failed! 2025-11-18 09:52:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:08:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:08:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:08:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:08:23 ERROR: BUSCO analysis failed! 2025-11-20 04:08:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:17:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:17:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:17:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:17:13 ERROR: BUSCO analysis failed! 2025-11-20 04:17:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:20:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:20:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:20:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:20:42 ERROR: BUSCO analysis failed! 2025-11-20 04:20:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 06:55:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 06:55:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 06:55:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 06:55:36 ERROR: BUSCO analysis failed! 2025-11-18 06:55:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:23:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:23:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:23:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:23:34 ERROR: BUSCO analysis failed! 2025-11-20 04:23:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:14:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:14:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:14:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:14:34 ERROR: BUSCO analysis failed! 2025-11-18 10:14:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:16:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:16:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:16:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:16:36 ERROR: BUSCO analysis failed! 2025-11-18 10:16:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:26:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:26:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:26:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:26:13 ERROR: BUSCO analysis failed! 2025-11-18 10:26:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:25:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:25:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:25:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:25:07 ERROR: BUSCO analysis failed! 2025-11-18 09:25:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:26:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:26:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:26:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:26:30 ERROR: BUSCO analysis failed! 2025-11-20 04:26:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:10:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:10:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:10:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:10:49 ERROR: BUSCO analysis failed! 2025-11-18 11:10:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:14:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:14:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:14:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:14:25 ERROR: BUSCO analysis failed! 2025-11-18 11:14:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:33:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:33:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:33:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:33:30 ERROR: BUSCO analysis failed! 2025-11-18 11:33:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:37:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:37:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:37:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:37:34 ERROR: BUSCO analysis failed! 2025-11-18 11:37:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:47:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:47:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:47:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:47:40 ERROR: BUSCO analysis failed! 2025-11-18 11:47:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:53:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:53:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:53:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:53:26 ERROR: BUSCO analysis failed! 2025-11-18 11:53:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:04:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:04:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:04:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:04:05 ERROR: BUSCO analysis failed! 2025-11-18 12:04:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:25:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:25:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:25:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:25:58 ERROR: BUSCO analysis failed! 2025-11-18 12:25:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:33:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:33:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:33:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:33:37 ERROR: BUSCO analysis failed! 2025-11-18 12:33:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:38:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:38:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:38:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:38:15 ERROR: BUSCO analysis failed! 2025-11-18 12:38:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 03:46:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 03:46:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:46:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:46:29 ERROR: BUSCO analysis failed! 2025-11-20 03:46:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:09:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:09:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:09:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:09:06 ERROR: BUSCO analysis failed! 2025-11-20 04:09:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:33:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:33:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:33:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:33:23 ERROR: BUSCO analysis failed! 2025-11-18 09:33:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:45:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:45:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:45:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:45:53 ERROR: BUSCO analysis failed! 2025-11-18 09:45:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:13:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:13:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:13:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:13:16 ERROR: BUSCO analysis failed! 2025-11-20 04:13:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:30:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:30:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:30:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:30:15 ERROR: BUSCO analysis failed! 2025-11-18 09:30:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:29:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:29:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:29:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:29:32 ERROR: BUSCO analysis failed! 2025-11-20 04:29:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:49:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:49:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:49:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:49:53 ERROR: BUSCO analysis failed! 2025-11-18 09:49:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:39:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:39:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:39:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:39:33 ERROR: BUSCO analysis failed! 2025-11-20 04:39:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:02:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:02:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:02:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:02:48 ERROR: BUSCO analysis failed! 2025-11-18 10:02:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:20:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:20:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:20:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:20:59 ERROR: BUSCO analysis failed! 2025-11-18 09:20:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:05:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:05:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:05:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:05:22 ERROR: BUSCO analysis failed! 2025-11-20 04:05:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:32:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:32:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:32:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:32:48 ERROR: BUSCO analysis failed! 2025-11-20 04:32:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:48:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:48:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:48:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:48:48 ERROR: BUSCO analysis failed! 2025-11-20 04:48:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:06:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:06:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:06:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:06:08 ERROR: BUSCO analysis failed! 2025-11-18 10:06:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:51:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:51:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:51:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:51:39 ERROR: BUSCO analysis failed! 2025-11-20 04:51:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:01:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:01:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:01:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:01:40 ERROR: BUSCO analysis failed! 2025-11-20 05:01:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:09:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:09:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:09:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:09:45 ERROR: BUSCO analysis failed! 2025-11-18 10:09:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:10:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:10:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:10:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:10:38 ERROR: BUSCO analysis failed! 2025-11-18 10:10:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:26:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:26:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:26:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:26:14 ERROR: BUSCO analysis failed! 2025-11-18 10:26:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 10:46:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 10:46:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 10:46:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 10:46:51 ERROR: BUSCO analysis failed! 2025-11-20 10:46:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:37:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:37:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:37:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:37:02 ERROR: BUSCO analysis failed! 2025-11-18 10:37:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:43:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:43:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:43:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:43:07 ERROR: BUSCO analysis failed! 2025-11-18 10:43:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:07:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:07:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:07:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:07:26 ERROR: BUSCO analysis failed! 2025-11-18 11:07:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 08:10:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 08:10:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:10:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:10:03 ERROR: BUSCO analysis failed! 2025-11-18 08:10:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:22:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:22:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:22:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:22:43 ERROR: BUSCO analysis failed! 2025-11-18 11:22:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 08:25:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 08:25:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:25:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:25:45 ERROR: BUSCO analysis failed! 2025-11-18 08:25:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:33:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:33:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:33:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:33:37 ERROR: BUSCO analysis failed! 2025-11-18 11:33:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:13:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:13:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:13:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:13:11 ERROR: BUSCO analysis failed! 2025-11-18 10:13:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:17:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:17:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:17:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:17:59 ERROR: BUSCO analysis failed! 2025-11-18 10:17:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:20:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:20:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:20:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:20:59 ERROR: BUSCO analysis failed! 2025-11-18 10:20:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:40:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:40:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:40:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:40:08 ERROR: BUSCO analysis failed! 2025-11-18 10:40:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:46:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:46:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:46:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:46:18 ERROR: BUSCO analysis failed! 2025-11-18 10:46:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:00:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:00:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:00:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:00:24 ERROR: BUSCO analysis failed! 2025-11-18 11:00:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:32:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:32:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:32:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:32:32 ERROR: BUSCO analysis failed! 2025-11-18 11:32:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:01:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:01:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:01:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:01:13 ERROR: BUSCO analysis failed! 2025-11-18 12:01:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:06:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:06:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:06:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:06:51 ERROR: BUSCO analysis failed! 2025-11-18 12:06:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:02:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:02:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:02:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:02:43 ERROR: BUSCO analysis failed! 2025-11-18 10:02:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:06:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:06:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:06:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:06:54 ERROR: BUSCO analysis failed! 2025-11-18 10:06:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:12:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:12:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:12:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:12:19 ERROR: BUSCO analysis failed! 2025-11-18 07:12:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:17:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:17:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:17:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:17:09 ERROR: BUSCO analysis failed! 2025-11-18 10:17:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:34:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:34:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:34:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:34:20 ERROR: BUSCO analysis failed! 2025-11-18 09:34:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:19:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:19:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:19:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:19:57 ERROR: BUSCO analysis failed! 2025-11-18 10:19:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:29:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:29:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:29:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:29:00 ERROR: BUSCO analysis failed! 2025-11-18 10:29:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:44:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:44:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:44:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:44:36 ERROR: BUSCO analysis failed! 2025-11-18 11:44:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:29:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:29:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:29:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:29:01 ERROR: BUSCO analysis failed! 2025-11-18 12:29:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:46:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:46:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:46:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:46:07 ERROR: BUSCO analysis failed! 2025-11-18 12:46:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:36:35 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:36:35 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:36:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:36:35 ERROR: BUSCO analysis failed! 2025-11-20 04:36:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:59:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:59:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:59:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:59:13 ERROR: BUSCO analysis failed! 2025-11-18 12:59:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:14:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:14:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:14:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:14:19 ERROR: BUSCO analysis failed! 2025-11-18 13:14:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:38:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:38:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:38:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:38:21 ERROR: BUSCO analysis failed! 2025-11-18 09:38:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:21:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:21:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:21:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:21:28 ERROR: BUSCO analysis failed! 2025-11-18 13:21:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:24:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:24:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:24:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:24:24 ERROR: BUSCO analysis failed! 2025-11-18 13:24:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 06:58:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 06:58:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 06:58:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 06:58:10 ERROR: BUSCO analysis failed! 2025-11-18 06:58:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:03:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:03:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:03:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:03:18 ERROR: BUSCO analysis failed! 2025-11-18 07:03:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:31:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:31:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:31:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:31:26 ERROR: BUSCO analysis failed! 2025-11-18 13:31:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:14:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:14:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:14:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:14:48 ERROR: BUSCO analysis failed! 2025-11-18 07:14:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:34:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:34:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:34:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:34:13 ERROR: BUSCO analysis failed! 2025-11-18 12:34:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:20:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:20:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:20:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:20:49 ERROR: BUSCO analysis failed! 2025-11-20 05:20:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:02:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:02:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:02:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:02:15 ERROR: BUSCO analysis failed! 2025-11-18 13:02:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:32:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:32:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:32:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:32:12 ERROR: BUSCO analysis failed! 2025-11-20 05:32:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:27:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:27:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:27:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:27:27 ERROR: BUSCO analysis failed! 2025-11-18 13:27:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:40:31 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:40:31 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:40:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:40:31 ERROR: BUSCO analysis failed! 2025-11-18 13:40:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:01:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:01:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:01:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:01:54 ERROR: BUSCO analysis failed! 2025-11-18 07:01:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:06:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:06:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:06:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:06:46 ERROR: BUSCO analysis failed! 2025-11-18 07:06:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:55:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:55:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:55:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:55:32 ERROR: BUSCO analysis failed! 2025-11-18 13:55:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:19:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:19:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:19:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:19:41 ERROR: BUSCO analysis failed! 2025-11-18 07:19:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:59:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:59:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:59:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:59:33 ERROR: BUSCO analysis failed! 2025-11-18 13:59:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:02:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:02:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:02:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:02:40 ERROR: BUSCO analysis failed! 2025-11-18 14:02:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:05:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:05:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:05:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:05:41 ERROR: BUSCO analysis failed! 2025-11-18 14:05:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:29:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:29:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:29:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:29:38 ERROR: BUSCO analysis failed! 2025-11-18 10:29:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 13:04:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 13:04:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 13:04:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 13:04:14 ERROR: BUSCO analysis failed! 2025-12-03 13:04:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:49:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:49:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:49:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:49:13 ERROR: BUSCO analysis failed! 2025-11-18 10:49:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:53:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:53:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:53:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:53:39 ERROR: BUSCO analysis failed! 2025-11-18 10:53:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:57:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:57:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:57:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:57:07 ERROR: BUSCO analysis failed! 2025-11-18 10:57:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:17:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:17:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:17:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:17:26 ERROR: BUSCO analysis failed! 2025-11-18 11:17:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:31:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:31:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:31:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:31:25 ERROR: BUSCO analysis failed! 2025-11-18 10:31:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:34:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:34:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:34:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:34:27 ERROR: BUSCO analysis failed! 2025-11-18 13:34:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:37:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:37:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:37:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:37:30 ERROR: BUSCO analysis failed! 2025-11-18 13:37:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:37:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:37:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:37:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:37:40 ERROR: BUSCO analysis failed! 2025-11-18 07:37:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:45:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:45:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:45:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:45:51 ERROR: BUSCO analysis failed! 2025-11-18 07:45:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:40:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:40:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:40:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:40:33 ERROR: BUSCO analysis failed! 2025-11-18 13:40:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:47:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:47:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:47:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:47:45 ERROR: BUSCO analysis failed! 2025-11-18 13:47:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:59:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:59:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:59:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:59:29 ERROR: BUSCO analysis failed! 2025-11-18 13:59:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:09:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:09:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:09:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:09:52 ERROR: BUSCO analysis failed! 2025-11-18 14:09:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:13:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:13:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:13:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:13:04 ERROR: BUSCO analysis failed! 2025-11-18 14:13:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:30:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:30:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:30:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:30:22 ERROR: BUSCO analysis failed! 2025-11-18 14:30:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:34:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:34:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:34:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:34:50 ERROR: BUSCO analysis failed! 2025-11-18 14:34:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:45:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:45:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:45:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:45:34 ERROR: BUSCO analysis failed! 2025-11-20 04:45:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:55:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:55:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:55:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:55:13 ERROR: BUSCO analysis failed! 2025-11-20 04:55:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 08:20:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 08:20:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:20:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:20:13 ERROR: BUSCO analysis failed! 2025-11-18 08:20:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:55:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:55:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:55:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:55:05 ERROR: BUSCO analysis failed! 2025-11-18 07:55:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:20:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:20:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:20:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:20:27 ERROR: BUSCO analysis failed! 2025-11-18 14:20:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:57:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:57:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:57:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:57:57 ERROR: BUSCO analysis failed! 2025-11-18 10:57:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 08:04:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 08:04:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:04:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 08:04:54 ERROR: BUSCO analysis failed! 2025-11-18 08:04:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:26:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:26:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:26:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:26:12 ERROR: BUSCO analysis failed! 2025-11-18 14:26:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:29:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:29:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:29:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:29:36 ERROR: BUSCO analysis failed! 2025-11-18 14:29:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:06:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:06:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:06:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:06:04 ERROR: BUSCO analysis failed! 2025-11-18 11:06:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:59:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:59:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:59:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:59:12 ERROR: BUSCO analysis failed! 2025-11-18 14:59:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 15:08:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 15:08:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 15:08:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 15:08:23 ERROR: BUSCO analysis failed! 2025-11-18 15:08:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 15:15:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 15:15:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 15:15:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 15:15:02 ERROR: BUSCO analysis failed! 2025-11-18 15:15:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 15:58:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 15:58:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 15:58:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 15:58:58 ERROR: BUSCO analysis failed! 2025-11-18 15:58:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 16:06:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 16:06:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 16:06:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 16:06:48 ERROR: BUSCO analysis failed! 2025-11-18 16:06:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 16:15:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 16:15:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 16:15:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 16:15:52 ERROR: BUSCO analysis failed! 2025-11-18 16:15:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:35:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:35:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:35:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:35:48 ERROR: BUSCO analysis failed! 2025-11-20 05:35:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:39:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:39:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:39:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:39:51 ERROR: BUSCO analysis failed! 2025-11-20 05:39:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:54:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:54:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:54:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:54:47 ERROR: BUSCO analysis failed! 2025-11-18 09:54:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:54:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:54:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:54:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:54:48 ERROR: BUSCO analysis failed! 2025-11-18 09:54:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:28:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:28:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:28:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:28:57 ERROR: BUSCO analysis failed! 2025-11-18 11:28:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:33:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:33:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:33:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:33:36 ERROR: BUSCO analysis failed! 2025-11-18 11:33:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:58:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:58:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:58:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:58:52 ERROR: BUSCO analysis failed! 2025-11-18 09:58:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:42:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:42:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:42:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:42:39 ERROR: BUSCO analysis failed! 2025-11-20 04:42:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:44:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:44:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:44:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:44:39 ERROR: BUSCO analysis failed! 2025-11-18 11:44:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:09:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:09:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:09:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:09:51 ERROR: BUSCO analysis failed! 2025-11-18 12:09:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:15:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:15:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:15:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:15:09 ERROR: BUSCO analysis failed! 2025-11-18 12:15:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:00:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:00:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:00:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:00:36 ERROR: BUSCO analysis failed! 2025-11-18 07:00:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:29:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:29:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:29:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:29:50 ERROR: BUSCO analysis failed! 2025-11-18 07:29:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:33:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:33:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:33:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:33:15 ERROR: BUSCO analysis failed! 2025-11-18 07:33:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:37:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:37:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:37:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:37:04 ERROR: BUSCO analysis failed! 2025-11-18 07:37:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:43:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:43:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:43:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:43:00 ERROR: BUSCO analysis failed! 2025-11-18 07:43:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:43:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:43:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:43:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:43:39 ERROR: BUSCO analysis failed! 2025-11-18 07:43:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:19:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:19:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:19:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:19:57 ERROR: BUSCO analysis failed! 2025-11-18 12:19:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:58:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:58:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:58:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:58:46 ERROR: BUSCO analysis failed! 2025-11-20 04:58:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:53:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:53:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:53:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:53:56 ERROR: BUSCO analysis failed! 2025-11-18 14:53:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:04:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:04:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:04:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:04:42 ERROR: BUSCO analysis failed! 2025-11-20 05:04:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:07:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:07:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:07:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:07:43 ERROR: BUSCO analysis failed! 2025-11-20 05:07:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:29:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:29:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:29:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:29:01 ERROR: BUSCO analysis failed! 2025-11-18 09:29:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:29:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:29:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:29:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:29:54 ERROR: BUSCO analysis failed! 2025-11-18 12:29:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:31:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:31:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:31:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:31:49 ERROR: BUSCO analysis failed! 2025-11-18 09:31:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:36:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:36:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:36:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:36:20 ERROR: BUSCO analysis failed! 2025-11-18 09:36:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:10:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:10:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:10:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:10:44 ERROR: BUSCO analysis failed! 2025-11-20 05:10:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:46:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:46:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:46:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:46:37 ERROR: BUSCO analysis failed! 2025-11-18 12:46:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:48:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:48:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:48:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:48:40 ERROR: BUSCO analysis failed! 2025-11-18 09:48:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:49:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:49:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:49:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:49:14 ERROR: BUSCO analysis failed! 2025-11-18 09:49:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:13:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:13:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:13:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:13:44 ERROR: BUSCO analysis failed! 2025-11-20 05:13:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:17:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:17:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:17:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:17:44 ERROR: BUSCO analysis failed! 2025-11-20 05:17:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:13:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:13:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:13:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:13:33 ERROR: BUSCO analysis failed! 2025-11-18 10:13:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:23:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:23:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:23:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:23:48 ERROR: BUSCO analysis failed! 2025-11-20 05:23:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:43:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:43:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:43:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:43:47 ERROR: BUSCO analysis failed! 2025-11-20 05:43:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:47:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:47:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:47:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:47:05 ERROR: BUSCO analysis failed! 2025-11-20 05:47:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 16:22:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 16:22:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 16:22:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 16:22:38 ERROR: BUSCO analysis failed! 2025-11-18 16:22:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 09:34:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 09:34:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:34:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 09:34:30 ERROR: BUSCO analysis failed! 2025-11-18 09:34:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:50:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:50:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:50:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:50:02 ERROR: BUSCO analysis failed! 2025-11-20 05:50:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:02:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:02:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:02:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:02:21 ERROR: BUSCO analysis failed! 2025-11-18 10:02:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:53:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:53:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:53:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:53:05 ERROR: BUSCO analysis failed! 2025-11-20 05:53:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 05:56:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 05:56:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:56:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 05:56:57 ERROR: BUSCO analysis failed! 2025-11-20 05:56:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 06:01:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 06:01:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:01:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:01:07 ERROR: BUSCO analysis failed! 2025-11-20 06:01:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:55:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:55:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:55:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:55:29 ERROR: BUSCO analysis failed! 2025-11-18 13:55:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:55:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:55:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:55:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:55:21 ERROR: BUSCO analysis failed! 2025-11-18 10:55:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:58:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:58:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:58:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:58:20 ERROR: BUSCO analysis failed! 2025-11-18 10:58:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:01:35 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:01:35 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:01:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:01:35 ERROR: BUSCO analysis failed! 2025-11-18 14:01:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 14:03:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 14:03:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:03:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 14:03:37 ERROR: BUSCO analysis failed! 2025-11-18 14:03:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 16:30:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 16:30:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 16:30:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 16:30:50 ERROR: BUSCO analysis failed! 2025-11-18 16:30:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:04:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:04:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:04:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:04:53 ERROR: BUSCO analysis failed! 2025-11-18 11:04:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:46:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:46:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:46:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:46:07 ERROR: BUSCO analysis failed! 2025-11-18 07:46:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:53:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:53:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:53:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:53:51 ERROR: BUSCO analysis failed! 2025-11-18 10:53:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:42:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:42:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:42:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:42:23 ERROR: BUSCO analysis failed! 2025-11-18 12:42:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 10:57:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 10:57:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:57:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 10:57:55 ERROR: BUSCO analysis failed! 2025-11-18 10:57:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:46:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:46:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:46:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:46:02 ERROR: BUSCO analysis failed! 2025-11-18 12:46:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:52:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:52:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:52:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:52:58 ERROR: BUSCO analysis failed! 2025-11-18 12:52:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 12:56:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 12:56:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:56:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 12:56:13 ERROR: BUSCO analysis failed! 2025-11-18 12:56:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:06:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:06:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:06:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:06:13 ERROR: BUSCO analysis failed! 2025-11-18 13:06:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:10:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:10:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:10:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:10:27 ERROR: BUSCO analysis failed! 2025-11-18 13:10:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:02:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:02:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:02:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:02:04 ERROR: BUSCO analysis failed! 2025-11-18 11:02:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:02:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:02:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:02:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:02:00 ERROR: BUSCO analysis failed! 2025-11-18 11:02:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:18:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:18:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:18:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:18:20 ERROR: BUSCO analysis failed! 2025-11-18 13:18:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:30:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:30:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:30:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:30:27 ERROR: BUSCO analysis failed! 2025-11-18 13:30:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:43:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:43:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:43:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:43:30 ERROR: BUSCO analysis failed! 2025-11-18 13:43:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 13:51:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 13:51:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:51:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 13:51:22 ERROR: BUSCO analysis failed! 2025-11-18 13:51:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 11:06:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 11:06:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:06:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 11:06:44 ERROR: BUSCO analysis failed! 2025-11-18 11:06:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 07:05:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 07:05:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:05:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 07:05:59 ERROR: BUSCO analysis failed! 2025-11-18 07:05:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 22:21:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 22:21:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 22:21:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 22:21:30 ERROR: BUSCO analysis failed! 2025-11-18 22:21:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-18 23:02:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-18 23:02:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 23:02:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-18 23:02:01 ERROR: BUSCO analysis failed! 2025-11-18 23:02:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1FATAL: exec /bin/bash failed: fork/exec /bin/bash: input/output error
12025-11-19 05:30:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-19 05:30:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-19 05:30:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-19 05:30:15 ERROR: BUSCO analysis failed! 2025-11-19 05:30:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-19 05:53:12 ERROR: No genes were recognized by BUSCO. Please check the content o
Show full stderr2025-11-19 05:53:12 ERROR: No genes were recognized by BUSCO. Please check the content of your input file. 2025-11-19 05:53:12 ERROR: BUSCO analysis failed! 2025-11-19 05:53:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-19 12:00:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-19 12:00:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-19 12:00:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-19 12:00:15 ERROR: BUSCO analysis failed! 2025-11-19 12:00:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-19 07:09:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-19 07:09:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-19 07:09:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-19 07:09:48 ERROR: BUSCO analysis failed! 2025-11-19 07:09:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-19 12:25:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-19 12:25:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-19 12:25:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-19 12:25:20 ERROR: BUSCO analysis failed! 2025-11-19 12:25:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-19 12:35:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-19 12:35:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-19 12:35:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-19 12:35:50 ERROR: BUSCO analysis failed! 2025-11-19 12:35:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-19 07:41:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-19 07:41:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/proteobacteria_odb10/refseq_db.faa.gz' 2025-11-19 07:41:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/proteobacteria_odb10/refseq_db.faa.gz' 2025-11-19 07:41:12 ERROR: BUSCO analysis failed! 2025-11-19 07:41:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/jetstream2/scratch/main/jobs-vgp/72684710/tool_script.sh: line 23: 77 Killed
Show full stderr/jetstream2/scratch/main/jobs-vgp/72684710/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot
12025-11-19 16:14:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-19 16:14:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-19 16:14:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-19 16:14:06 ERROR: BUSCO analysis failed! 2025-11-19 16:14:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/jetstream2/scratch/main/jobs-vgp/72689839/tool_script.sh: line 23: 77 Killed
Show full stderr/jetstream2/scratch/main/jobs-vgp/72689839/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'eukaryota_odb10' --miniprot
1/jetstream2/scratch/main/jobs-vgp/72690103/tool_script.sh: line 23: 77 Killed
Show full stderr/jetstream2/scratch/main/jobs-vgp/72690103/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'eukaryota_odb10' --miniprot
12025-11-20 01:32:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 01:32:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 01:32:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 01:32:17 ERROR: BUSCO analysis failed! 2025-11-20 01:32:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-19 23:51:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-19 23:51:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-19 23:51:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-19 23:51:30 ERROR: BUSCO analysis failed! 2025-11-19 23:51:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 06:26:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 06:26:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:26:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:26:28 ERROR: BUSCO analysis failed! 2025-11-20 06:26:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 06:27:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 06:27:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:27:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:27:04 ERROR: BUSCO analysis failed! 2025-11-20 06:27:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 06:26:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 06:26:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:26:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:26:50 ERROR: BUSCO analysis failed! 2025-11-20 06:26:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 06:28:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 06:28:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:28:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:28:48 ERROR: BUSCO analysis failed! 2025-11-20 06:28:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 06:29:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 06:29:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:29:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:29:08 ERROR: BUSCO analysis failed! 2025-11-20 06:29:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 06:29:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 06:29:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:29:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:29:27 ERROR: BUSCO analysis failed! 2025-11-20 06:29:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 06:29:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 06:29:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:29:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:29:43 ERROR: BUSCO analysis failed! 2025-11-20 06:29:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 06:31:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 06:31:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:31:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:31:22 ERROR: BUSCO analysis failed! 2025-11-20 06:31:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 06:31:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 06:31:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:31:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 06:31:42 ERROR: BUSCO analysis failed! 2025-11-20 06:31:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 07:03:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 07:03:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 07:03:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 07:03:52 ERROR: BUSCO analysis failed! 2025-11-20 07:03:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 08:00:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 08:00:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz' 2025-11-20 08:00:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz' 2025-11-20 08:00:46 ERROR: BUSCO analysis failed! 2025-11-20 08:00:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 01:16:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 01:16:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 01:16:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 01:16:03 ERROR: BUSCO analysis failed! 2025-11-20 01:16:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 09:37:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 09:37:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz' 2025-11-20 09:37:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz' 2025-11-20 09:37:03 ERROR: BUSCO analysis failed! 2025-11-20 09:37:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 01:44:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 01:44:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz' 2025-11-20 01:44:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz' 2025-11-20 01:44:45 ERROR: BUSCO analysis failed! 2025-11-20 01:44:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 09:45:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 09:45:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_phylum_odb10/refseq_db.faa.gz' 2025-11-20 09:45:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_phylum_odb10/refseq_db.faa.gz' 2025-11-20 09:45:25 ERROR: BUSCO analysis failed! 2025-11-20 09:45:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 09:53:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 09:53:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 09:53:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 09:53:19 ERROR: BUSCO analysis failed! 2025-11-20 09:53:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 10:07:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 10:07:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 10:07:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 10:07:22 ERROR: BUSCO analysis failed! 2025-11-20 10:07:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 02:19:31 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-11-20 02:19:31 ERROR: The input file does not contain nucleotide sequences. 2025-11-20 02:19:31 ERROR: BUSCO analysis failed! 2025-11-20 02:19:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 03:41:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 03:41:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:41:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 03:41:08 ERROR: BUSCO analysis failed! 2025-11-20 03:41:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 11:48:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 11:48:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 11:48:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 11:48:47 ERROR: BUSCO analysis failed! 2025-11-20 11:48:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 11:55:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 11:55:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-20 11:55:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-20 11:55:57 ERROR: BUSCO analysis failed! 2025-11-20 11:55:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 11:56:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 11:56:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-20 11:56:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-20 11:56:27 ERROR: BUSCO analysis failed! 2025-11-20 11:56:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 04:00:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 04:00:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:00:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 04:00:48 ERROR: BUSCO analysis failed! 2025-11-20 04:00:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/jetstream2/scratch/main/jobs/72713223/tool_script.sh: line 23: 31 Killed
Show full stderr/jetstream2/scratch/main/jobs/72713223/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot
12025-11-20 08:26:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 08:26:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 08:26:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 08:26:47 ERROR: BUSCO analysis failed! 2025-11-20 08:26:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 11:16:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 11:16:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 11:16:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 11:16:34 ERROR: BUSCO analysis failed! 2025-11-20 11:16:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 11:16:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 11:16:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 11:16:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 11:16:33 ERROR: BUSCO analysis failed! 2025-11-20 11:16:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 11:28:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 11:28:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 11:28:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 11:28:29 ERROR: BUSCO analysis failed! 2025-11-20 11:28:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 15:14:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 15:14:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 15:14:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 15:14:36 ERROR: BUSCO analysis failed! 2025-11-20 15:14:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 12:28:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 12:28:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 12:28:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 12:28:46 ERROR: BUSCO analysis failed! 2025-11-20 12:28:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-20 12:28:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-20 12:28:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 12:28:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-20 12:28:48 ERROR: BUSCO analysis failed! 2025-11-20 12:28:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-21 06:05:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-21 06:05:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 06:05:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 06:05:13 ERROR: BUSCO analysis failed! 2025-11-21 06:05:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-21 04:33:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-21 04:33:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 04:33:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 04:33:24 ERROR: BUSCO analysis failed! 2025-11-21 04:33:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-21 07:43:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-21 07:43:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 07:43:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 07:43:22 ERROR: BUSCO analysis failed! 2025-11-21 07:43:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-21 04:48:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-21 04:48:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 04:48:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 04:48:01 ERROR: BUSCO analysis failed! 2025-11-21 04:48:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-21 18:52:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-21 18:52:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 18:52:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 18:52:06 ERROR: BUSCO analysis failed! 2025-11-21 18:52:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-21 21:46:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-21 21:46:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 21:46:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 21:46:07 ERROR: BUSCO analysis failed! 2025-11-21 21:46:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-21 21:50:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-21 21:50:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 21:50:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 21:50:07 ERROR: BUSCO analysis failed! 2025-11-21 21:50:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-21 17:04:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-21 17:04:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 17:04:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-21 17:04:25 ERROR: BUSCO analysis failed! 2025-11-21 17:04:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-21 17:12:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-21 17:12:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-21 17:12:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-11-21 17:12:27 ERROR: BUSCO analysis failed! 2025-11-21 17:12:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-21 14:28:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-21 14:28:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-11-21 14:28:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-11-21 14:28:04 ERROR: BUSCO analysis failed! 2025-11-21 14:28:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 01:45:57 ERROR: The character "/" is present in the fasta header >rnd-1_family
Show full stderr2025-11-22 01:45:57 ERROR: The character "/" is present in the fasta header >rnd-1_family-0#LINE/Tad1, which will crash Reader. Please clean the header of your input file. 2025-11-22 01:45:57 ERROR: BUSCO analysis failed! 2025-11-22 01:45:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 04:32:27 ERROR: The character "/" is present in the fasta header >rnd-1_family
Show full stderr2025-11-22 04:32:27 ERROR: The character "/" is present in the fasta header >rnd-1_family-0#LINE/Tad1, which will crash Reader. Please clean the header of your input file. 2025-11-22 04:32:27 ERROR: BUSCO analysis failed! 2025-11-22 04:32:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 15:34:20 ERROR: The character "/" is present in the fasta header >rnd-1_family
Show full stderr2025-11-22 15:34:20 ERROR: The character "/" is present in the fasta header >rnd-1_family-0#LINE/Tad1, which will crash Reader. Please clean the header of your input file. 2025-11-22 15:34:20 ERROR: BUSCO analysis failed! 2025-11-22 15:34:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 10:01:54 ERROR: The character "/" is present in the fasta header >rnd-1_family
Show full stderr2025-11-22 10:01:54 ERROR: The character "/" is present in the fasta header >rnd-1_family-0#LINE/Tad1, which will crash Reader. Please clean the header of your input file. 2025-11-22 10:01:54 ERROR: BUSCO analysis failed! 2025-11-22 10:01:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 22:15:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 22:15:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-22 22:15:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-11-22 22:15:56 ERROR: BUSCO analysis failed! 2025-11-22 22:15:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 17:26:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 17:26:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 17:26:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 17:26:10 ERROR: BUSCO analysis failed! 2025-11-22 17:26:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 22:13:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 22:13:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 22:13:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 22:13:54 ERROR: BUSCO analysis failed! 2025-11-22 22:13:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 01:57:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 01:57:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 01:57:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 01:57:43 ERROR: BUSCO analysis failed! 2025-11-23 01:57:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:01:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:01:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:01:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:01:27 ERROR: BUSCO analysis failed! 2025-11-23 02:01:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:02:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:02:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:02:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:02:16 ERROR: BUSCO analysis failed! 2025-11-23 02:02:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 22:59:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 22:59:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 22:59:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 22:59:33 ERROR: BUSCO analysis failed! 2025-11-22 22:59:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:04:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:04:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:04:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:04:40 ERROR: BUSCO analysis failed! 2025-11-23 07:04:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:06:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:06:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:06:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:06:59 ERROR: BUSCO analysis failed! 2025-11-22 23:06:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:09:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:09:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:09:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:09:33 ERROR: BUSCO analysis failed! 2025-11-22 23:09:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:09:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:09:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:09:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:09:44 ERROR: BUSCO analysis failed! 2025-11-22 23:09:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:17:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:17:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:17:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:17:33 ERROR: BUSCO analysis failed! 2025-11-22 23:17:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:33:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:33:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:33:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:33:20 ERROR: BUSCO analysis failed! 2025-11-22 23:33:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:35:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:35:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:35:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:35:29 ERROR: BUSCO analysis failed! 2025-11-22 23:35:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:38:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:38:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:38:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:38:14 ERROR: BUSCO analysis failed! 2025-11-22 23:38:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:45:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:45:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:45:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:45:37 ERROR: BUSCO analysis failed! 2025-11-22 23:45:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:47:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:47:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:47:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:47:21 ERROR: BUSCO analysis failed! 2025-11-22 23:47:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 01:57:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 01:57:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 01:57:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 01:57:46 ERROR: BUSCO analysis failed! 2025-11-23 01:57:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 22:59:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 22:59:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 22:59:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 22:59:29 ERROR: BUSCO analysis failed! 2025-11-22 22:59:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:04:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:04:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:04:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:04:44 ERROR: BUSCO analysis failed! 2025-11-22 23:04:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:12:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:12:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:12:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:12:18 ERROR: BUSCO analysis failed! 2025-11-22 23:12:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:14:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:14:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:14:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:14:45 ERROR: BUSCO analysis failed! 2025-11-22 23:14:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:20:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:20:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:20:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:20:09 ERROR: BUSCO analysis failed! 2025-11-23 02:20:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:33:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:33:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:33:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:33:03 ERROR: BUSCO analysis failed! 2025-11-22 23:33:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:40:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:40:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:40:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:40:30 ERROR: BUSCO analysis failed! 2025-11-22 23:40:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:42:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:42:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:42:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:42:12 ERROR: BUSCO analysis failed! 2025-11-22 23:42:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:46:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:46:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:46:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:46:42 ERROR: BUSCO analysis failed! 2025-11-23 07:46:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:48:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:48:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:48:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:48:02 ERROR: BUSCO analysis failed! 2025-11-22 23:48:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:49:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:49:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:49:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:49:42 ERROR: BUSCO analysis failed! 2025-11-22 23:49:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:52:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:52:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:52:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:52:21 ERROR: BUSCO analysis failed! 2025-11-22 23:52:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:54:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:54:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:54:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:54:51 ERROR: BUSCO analysis failed! 2025-11-22 23:54:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:14:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:14:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:14:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:14:58 ERROR: BUSCO analysis failed! 2025-11-23 03:14:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:07:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:07:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:07:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:07:45 ERROR: BUSCO analysis failed! 2025-11-23 00:07:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:02:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:02:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:02:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:02:10 ERROR: BUSCO analysis failed! 2025-11-22 23:02:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:04:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:04:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:04:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:04:30 ERROR: BUSCO analysis failed! 2025-11-22 23:04:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:12:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:12:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:12:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:12:04 ERROR: BUSCO analysis failed! 2025-11-22 23:12:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:14:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:14:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:14:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:14:34 ERROR: BUSCO analysis failed! 2025-11-22 23:14:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:15:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:15:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:15:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:15:06 ERROR: BUSCO analysis failed! 2025-11-22 23:15:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:20:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:20:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:20:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:20:06 ERROR: BUSCO analysis failed! 2025-11-22 23:20:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:28:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:28:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:28:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:28:22 ERROR: BUSCO analysis failed! 2025-11-22 23:28:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:22:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:22:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:22:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:22:45 ERROR: BUSCO analysis failed! 2025-11-22 23:22:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:30:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:30:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:30:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:30:50 ERROR: BUSCO analysis failed! 2025-11-22 23:30:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:35:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:35:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:35:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:35:46 ERROR: BUSCO analysis failed! 2025-11-22 23:35:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:37:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:37:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:37:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:37:59 ERROR: BUSCO analysis failed! 2025-11-22 23:37:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:42:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:42:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:42:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:42:58 ERROR: BUSCO analysis failed! 2025-11-22 23:42:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:50:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:50:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:50:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:50:41 ERROR: BUSCO analysis failed! 2025-11-22 23:50:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:58:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:58:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:58:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:58:05 ERROR: BUSCO analysis failed! 2025-11-22 23:58:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:59:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:59:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:59:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:59:51 ERROR: BUSCO analysis failed! 2025-11-22 23:59:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:00:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:00:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:00:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:00:41 ERROR: BUSCO analysis failed! 2025-11-23 00:00:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:02:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:02:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:02:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:02:06 ERROR: BUSCO analysis failed! 2025-11-22 23:02:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:10:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:10:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:10:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:10:40 ERROR: BUSCO analysis failed! 2025-11-23 02:10:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:07:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:07:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:07:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:07:16 ERROR: BUSCO analysis failed! 2025-11-22 23:07:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:17:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:17:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:17:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:17:13 ERROR: BUSCO analysis failed! 2025-11-22 23:17:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:22:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:22:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:22:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:22:49 ERROR: BUSCO analysis failed! 2025-11-23 02:22:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:20:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:20:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:20:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:20:07 ERROR: BUSCO analysis failed! 2025-11-22 23:20:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:22:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:22:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:22:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:22:34 ERROR: BUSCO analysis failed! 2025-11-22 23:22:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:25:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:25:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:25:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:25:29 ERROR: BUSCO analysis failed! 2025-11-22 23:25:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:30:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:30:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:30:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:30:36 ERROR: BUSCO analysis failed! 2025-11-22 23:30:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:44:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:44:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:44:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:44:50 ERROR: BUSCO analysis failed! 2025-11-22 23:44:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:57:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:57:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:57:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:57:20 ERROR: BUSCO analysis failed! 2025-11-22 23:57:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:27:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:27:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:27:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:27:33 ERROR: BUSCO analysis failed! 2025-11-23 03:27:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:15:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:15:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:15:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:15:29 ERROR: BUSCO analysis failed! 2025-11-23 00:15:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:17:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:17:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:17:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:17:59 ERROR: BUSCO analysis failed! 2025-11-23 00:17:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:18:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:18:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:18:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:18:19 ERROR: BUSCO analysis failed! 2025-11-23 00:18:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:20:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:20:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:20:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:20:29 ERROR: BUSCO analysis failed! 2025-11-23 00:20:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:52:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:52:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:52:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:52:25 ERROR: BUSCO analysis failed! 2025-11-22 23:52:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-22 23:55:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-22 23:55:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:55:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-22 23:55:13 ERROR: BUSCO analysis failed! 2025-11-22 23:55:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:02:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:02:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:02:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:02:51 ERROR: BUSCO analysis failed! 2025-11-23 03:02:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:10:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:10:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:10:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:10:49 ERROR: BUSCO analysis failed! 2025-11-23 00:10:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:31:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:31:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:31:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:31:00 ERROR: BUSCO analysis failed! 2025-11-23 00:31:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:33:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:33:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:33:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:33:33 ERROR: BUSCO analysis failed! 2025-11-23 00:33:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:08:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:08:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:08:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:08:19 ERROR: BUSCO analysis failed! 2025-11-23 00:08:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:12:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:12:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:12:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:12:45 ERROR: BUSCO analysis failed! 2025-11-23 00:12:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:13:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:13:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:13:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:13:19 ERROR: BUSCO analysis failed! 2025-11-23 00:13:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:36:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:36:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:36:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:36:00 ERROR: BUSCO analysis failed! 2025-11-23 00:36:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:38:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:38:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:38:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:38:34 ERROR: BUSCO analysis failed! 2025-11-23 00:38:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:02:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:02:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:02:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:02:49 ERROR: BUSCO analysis failed! 2025-11-23 00:02:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:03:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:03:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:03:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:03:19 ERROR: BUSCO analysis failed! 2025-11-23 00:03:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:05:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:05:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:05:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:05:17 ERROR: BUSCO analysis failed! 2025-11-23 00:05:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:05:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:05:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:05:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:05:50 ERROR: BUSCO analysis failed! 2025-11-23 00:05:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:10:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:10:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:10:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:10:17 ERROR: BUSCO analysis failed! 2025-11-23 00:10:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:23:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:23:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:23:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:23:59 ERROR: BUSCO analysis failed! 2025-11-23 03:23:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:15:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:15:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:15:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:15:48 ERROR: BUSCO analysis failed! 2025-11-23 00:15:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:23:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:23:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:23:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:23:06 ERROR: BUSCO analysis failed! 2025-11-23 00:23:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:23:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:23:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:23:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:23:21 ERROR: BUSCO analysis failed! 2025-11-23 00:23:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:25:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:25:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:25:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:25:47 ERROR: BUSCO analysis failed! 2025-11-23 00:25:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:39:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:39:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:39:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:39:49 ERROR: BUSCO analysis failed! 2025-11-23 03:39:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:20:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:20:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:20:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:20:51 ERROR: BUSCO analysis failed! 2025-11-23 00:20:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:31:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:31:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:31:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:31:20 ERROR: BUSCO analysis failed! 2025-11-23 00:31:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:33:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:33:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:33:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:33:53 ERROR: BUSCO analysis failed! 2025-11-23 00:33:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:36:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:36:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:36:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:36:19 ERROR: BUSCO analysis failed! 2025-11-23 00:36:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 00:38:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 00:38:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:38:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 00:38:45 ERROR: BUSCO analysis failed! 2025-11-23 00:38:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:06:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:06:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:06:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:06:09 ERROR: BUSCO analysis failed! 2025-11-23 02:06:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:06:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:06:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:06:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:06:07 ERROR: BUSCO analysis failed! 2025-11-23 02:06:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:37:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:37:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:37:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:37:22 ERROR: BUSCO analysis failed! 2025-11-23 02:37:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:40:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:40:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:40:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:40:02 ERROR: BUSCO analysis failed! 2025-11-23 02:40:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:18:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:18:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:18:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:18:38 ERROR: BUSCO analysis failed! 2025-11-23 02:18:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:20:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:20:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:20:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:20:43 ERROR: BUSCO analysis failed! 2025-11-23 02:20:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:44:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:44:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:44:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:44:42 ERROR: BUSCO analysis failed! 2025-11-23 02:44:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:48:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:48:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:48:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:48:24 ERROR: BUSCO analysis failed! 2025-11-23 02:48:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:08:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:08:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:08:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:08:04 ERROR: BUSCO analysis failed! 2025-11-23 02:08:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:20:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:20:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:20:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:20:52 ERROR: BUSCO analysis failed! 2025-11-23 02:20:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:20:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:20:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:20:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:20:41 ERROR: BUSCO analysis failed! 2025-11-23 02:20:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:23:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:23:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:23:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:23:28 ERROR: BUSCO analysis failed! 2025-11-23 02:23:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:26:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:26:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:26:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:26:10 ERROR: BUSCO analysis failed! 2025-11-23 02:26:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:27:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:27:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:27:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:27:00 ERROR: BUSCO analysis failed! 2025-11-23 02:27:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:27:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:27:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:27:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:27:02 ERROR: BUSCO analysis failed! 2025-11-23 02:27:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:31:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:31:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:31:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:31:22 ERROR: BUSCO analysis failed! 2025-11-23 02:31:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:39:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:39:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:39:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:39:23 ERROR: BUSCO analysis failed! 2025-11-23 02:39:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:42:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:42:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:42:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:42:03 ERROR: BUSCO analysis failed! 2025-11-23 02:42:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:39:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:39:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:39:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:39:05 ERROR: BUSCO analysis failed! 2025-11-23 07:39:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:14:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:14:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:14:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:14:54 ERROR: BUSCO analysis failed! 2025-11-23 02:14:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:15:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:15:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:15:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:15:50 ERROR: BUSCO analysis failed! 2025-11-23 02:15:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:12:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:12:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:12:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:12:25 ERROR: BUSCO analysis failed! 2025-11-23 02:12:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:12:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:12:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:12:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:12:23 ERROR: BUSCO analysis failed! 2025-11-23 02:12:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:18:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:18:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:18:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:18:12 ERROR: BUSCO analysis failed! 2025-11-23 02:18:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:28:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:28:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:28:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:28:34 ERROR: BUSCO analysis failed! 2025-11-23 02:28:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:16:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:16:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:16:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:16:29 ERROR: BUSCO analysis failed! 2025-11-23 02:16:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:16:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:16:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:16:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:16:26 ERROR: BUSCO analysis failed! 2025-11-23 02:16:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:16:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:16:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:16:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:16:27 ERROR: BUSCO analysis failed! 2025-11-23 02:16:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:29:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:29:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:29:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:29:13 ERROR: BUSCO analysis failed! 2025-11-23 02:29:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:34:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:34:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:34:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:34:43 ERROR: BUSCO analysis failed! 2025-11-23 02:34:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:42:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:42:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:42:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:42:42 ERROR: BUSCO analysis failed! 2025-11-23 02:42:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:25:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:25:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:25:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:25:50 ERROR: BUSCO analysis failed! 2025-11-23 02:25:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:31:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:31:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:31:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:31:56 ERROR: BUSCO analysis failed! 2025-11-23 02:31:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:33:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:33:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:33:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:33:59 ERROR: BUSCO analysis failed! 2025-11-23 02:33:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:36:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:36:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:36:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:36:41 ERROR: BUSCO analysis failed! 2025-11-23 02:36:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:54:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:54:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:54:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:54:51 ERROR: BUSCO analysis failed! 2025-11-23 02:54:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:00:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:00:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:00:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:00:37 ERROR: BUSCO analysis failed! 2025-11-23 03:00:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:03:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:03:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:03:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:03:13 ERROR: BUSCO analysis failed! 2025-11-23 03:03:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:36:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:36:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:36:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:36:37 ERROR: BUSCO analysis failed! 2025-11-23 07:36:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:46:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:46:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:46:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:46:24 ERROR: BUSCO analysis failed! 2025-11-23 07:46:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:05:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:05:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:05:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:05:32 ERROR: BUSCO analysis failed! 2025-11-23 03:05:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:41:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:41:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:41:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:41:45 ERROR: BUSCO analysis failed! 2025-11-23 02:41:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:45:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:45:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:45:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:45:23 ERROR: BUSCO analysis failed! 2025-11-23 02:45:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:43:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:43:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:43:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:43:52 ERROR: BUSCO analysis failed! 2025-11-23 02:43:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:43:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:43:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:43:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:43:49 ERROR: BUSCO analysis failed! 2025-11-23 02:43:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:44:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:44:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:44:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:44:16 ERROR: BUSCO analysis failed! 2025-11-23 07:44:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:30:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:30:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:30:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:30:20 ERROR: BUSCO analysis failed! 2025-11-23 03:30:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:48:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:48:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:48:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:48:11 ERROR: BUSCO analysis failed! 2025-11-23 02:48:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:48:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:48:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:48:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:48:43 ERROR: BUSCO analysis failed! 2025-11-23 07:48:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:48:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:48:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:48:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:48:57 ERROR: BUSCO analysis failed! 2025-11-23 02:48:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:36:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:36:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:36:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:36:59 ERROR: BUSCO analysis failed! 2025-11-23 07:36:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:08:35 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:08:35 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:08:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:08:35 ERROR: BUSCO analysis failed! 2025-11-23 03:08:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:41:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:41:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:41:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:41:42 ERROR: BUSCO analysis failed! 2025-11-23 07:41:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:18:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:18:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:18:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:18:36 ERROR: BUSCO analysis failed! 2025-11-23 03:18:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:21:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:21:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:21:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:21:24 ERROR: BUSCO analysis failed! 2025-11-23 03:21:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:46:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:46:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:46:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:46:09 ERROR: BUSCO analysis failed! 2025-11-23 07:46:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:36:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:36:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:36:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:36:07 ERROR: BUSCO analysis failed! 2025-11-23 03:36:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:38:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:38:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:38:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:38:50 ERROR: BUSCO analysis failed! 2025-11-23 03:38:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:49:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:49:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:49:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:49:00 ERROR: BUSCO analysis failed! 2025-11-23 07:49:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:49:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:49:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:49:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:49:14 ERROR: BUSCO analysis failed! 2025-11-23 07:49:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:53:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:53:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:53:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:53:07 ERROR: BUSCO analysis failed! 2025-11-23 07:53:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:52:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:52:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:52:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:52:02 ERROR: BUSCO analysis failed! 2025-11-23 02:52:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:54:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:54:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:54:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:54:33 ERROR: BUSCO analysis failed! 2025-11-23 02:54:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:34:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:34:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:34:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:34:13 ERROR: BUSCO analysis failed! 2025-11-23 07:34:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:35:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:35:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:35:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:35:38 ERROR: BUSCO analysis failed! 2025-11-23 07:35:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:37:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:37:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:37:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:37:54 ERROR: BUSCO analysis failed! 2025-11-23 07:37:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:00:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:00:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:00:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:00:15 ERROR: BUSCO analysis failed! 2025-11-23 03:00:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:44:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:44:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:44:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:44:13 ERROR: BUSCO analysis failed! 2025-11-23 07:44:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:11:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:11:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:11:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:11:14 ERROR: BUSCO analysis failed! 2025-11-23 03:11:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:54:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:54:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:54:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:54:32 ERROR: BUSCO analysis failed! 2025-11-23 07:54:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:54:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:54:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:54:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:54:53 ERROR: BUSCO analysis failed! 2025-11-23 07:54:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:05:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:05:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:05:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:05:51 ERROR: BUSCO analysis failed! 2025-11-23 03:05:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:57:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:57:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:57:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:57:34 ERROR: BUSCO analysis failed! 2025-11-23 07:57:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:00:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:00:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:00:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:00:45 ERROR: BUSCO analysis failed! 2025-11-23 03:00:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:00:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:00:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:00:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:00:44 ERROR: BUSCO analysis failed! 2025-11-23 03:00:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:33:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:33:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:33:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:33:26 ERROR: BUSCO analysis failed! 2025-11-23 03:33:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 02:56:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 02:56:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:56:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 02:56:34 ERROR: BUSCO analysis failed! 2025-11-23 02:56:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:55:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:55:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:55:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:55:44 ERROR: BUSCO analysis failed! 2025-11-23 07:55:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:58:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:58:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:58:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:58:17 ERROR: BUSCO analysis failed! 2025-11-23 07:58:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:13:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:13:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:13:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:13:45 ERROR: BUSCO analysis failed! 2025-11-23 08:13:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:15:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:15:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:15:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:15:19 ERROR: BUSCO analysis failed! 2025-11-23 03:15:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:30:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:30:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:30:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:30:00 ERROR: BUSCO analysis failed! 2025-11-23 08:30:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:30:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:30:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:30:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:30:05 ERROR: BUSCO analysis failed! 2025-11-23 08:30:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:51:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:51:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:51:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:51:33 ERROR: BUSCO analysis failed! 2025-11-23 07:51:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:15:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:15:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:15:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:15:38 ERROR: BUSCO analysis failed! 2025-11-23 08:15:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:32:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:32:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:32:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:32:47 ERROR: BUSCO analysis failed! 2025-11-23 08:32:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:32:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:32:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:32:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:32:50 ERROR: BUSCO analysis failed! 2025-11-23 08:32:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:34:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:34:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:34:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:34:20 ERROR: BUSCO analysis failed! 2025-11-23 03:34:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:36:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:36:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:36:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:36:07 ERROR: BUSCO analysis failed! 2025-11-23 08:36:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:36:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:36:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:36:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:36:51 ERROR: BUSCO analysis failed! 2025-11-23 08:36:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 07:57:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 07:57:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:57:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 07:57:00 ERROR: BUSCO analysis failed! 2025-11-23 07:57:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 03:09:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 03:09:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:09:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 03:09:10 ERROR: BUSCO analysis failed! 2025-11-23 03:09:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:33:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:33:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:33:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:33:23 ERROR: BUSCO analysis failed! 2025-11-23 08:33:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:35:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:35:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:35:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:35:45 ERROR: BUSCO analysis failed! 2025-11-23 08:35:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:35:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:35:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:35:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:35:48 ERROR: BUSCO analysis failed! 2025-11-23 08:35:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:38:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:38:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:38:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:38:30 ERROR: BUSCO analysis failed! 2025-11-23 08:38:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:25:35 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:25:35 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:25:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:25:35 ERROR: BUSCO analysis failed! 2025-11-23 08:25:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:39:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:39:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:39:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:39:30 ERROR: BUSCO analysis failed! 2025-11-23 08:39:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 08:38:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 08:38:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:38:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 08:38:45 ERROR: BUSCO analysis failed! 2025-11-23 08:38:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 12:19:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 12:19:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 12:19:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 12:19:55 ERROR: BUSCO analysis failed! 2025-11-23 12:19:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 12:56:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 12:56:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-23 12:56:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-23 12:56:51 ERROR: BUSCO analysis failed! 2025-11-23 12:56:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 13:02:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 13:02:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 13:02:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 13:02:42 ERROR: BUSCO analysis failed! 2025-11-23 13:02:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 13:09:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 13:09:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 13:09:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 13:09:26 ERROR: BUSCO analysis failed! 2025-11-23 13:09:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 18:10:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 18:10:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 18:10:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 18:10:08 ERROR: BUSCO analysis failed! 2025-11-23 18:10:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 18:17:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 18:17:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 18:17:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 18:17:09 ERROR: BUSCO analysis failed! 2025-11-23 18:17:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 15:20:26 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-11-23 15:20:26 ERROR: The input file does not contain nucleotide sequences. 2025-11-23 15:20:26 ERROR: BUSCO analysis failed! 2025-11-23 15:20:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:02:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:02:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:02:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:02:36 ERROR: BUSCO analysis failed! 2025-11-24 03:02:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-23 19:30:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-23 19:30:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 19:30:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-23 19:30:02 ERROR: BUSCO analysis failed! 2025-11-23 19:30:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:19:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:19:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:19:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:19:24 ERROR: BUSCO analysis failed! 2025-11-24 02:19:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:23:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:23:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:23:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:23:13 ERROR: BUSCO analysis failed! 2025-11-24 02:23:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:42:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:42:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:42:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:42:59 ERROR: BUSCO analysis failed! 2025-11-24 02:42:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:46:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:46:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:46:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:46:36 ERROR: BUSCO analysis failed! 2025-11-24 02:46:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:55:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:55:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:55:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:55:00 ERROR: BUSCO analysis failed! 2025-11-24 02:55:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:58:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:58:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:58:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:58:44 ERROR: BUSCO analysis failed! 2025-11-24 02:58:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:06:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:06:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:06:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:06:06 ERROR: BUSCO analysis failed! 2025-11-24 03:06:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:19:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:19:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:19:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:19:15 ERROR: BUSCO analysis failed! 2025-11-24 03:19:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:32:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:32:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:32:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:32:58 ERROR: BUSCO analysis failed! 2025-11-24 03:32:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:45:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:45:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:45:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:45:12 ERROR: BUSCO analysis failed! 2025-11-24 03:45:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:48:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:48:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:48:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:48:48 ERROR: BUSCO analysis failed! 2025-11-24 03:48:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:55:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:55:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:55:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:55:25 ERROR: BUSCO analysis failed! 2025-11-24 03:55:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:58:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:58:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:58:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:58:10 ERROR: BUSCO analysis failed! 2025-11-24 03:58:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:27:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:27:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:27:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:27:39 ERROR: BUSCO analysis failed! 2025-11-24 04:27:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:40:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:40:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:40:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:40:29 ERROR: BUSCO analysis failed! 2025-11-24 04:40:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:43:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:43:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:43:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:43:15 ERROR: BUSCO analysis failed! 2025-11-24 04:43:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:23:31 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:23:31 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:23:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:23:31 ERROR: BUSCO analysis failed! 2025-11-24 02:23:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:37:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:37:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:37:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:37:38 ERROR: BUSCO analysis failed! 2025-11-24 02:37:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:08:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:08:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:08:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:08:49 ERROR: BUSCO analysis failed! 2025-11-24 03:08:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:38:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:38:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:38:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:38:25 ERROR: BUSCO analysis failed! 2025-11-24 03:38:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:41:31 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:41:31 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:41:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:41:31 ERROR: BUSCO analysis failed! 2025-11-24 03:41:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:51:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:51:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:51:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:51:28 ERROR: BUSCO analysis failed! 2025-11-24 03:51:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:04:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:04:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:04:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:04:18 ERROR: BUSCO analysis failed! 2025-11-24 04:04:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:07:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:07:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:07:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:07:16 ERROR: BUSCO analysis failed! 2025-11-24 04:07:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:13:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:13:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:13:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:13:22 ERROR: BUSCO analysis failed! 2025-11-24 04:13:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:34:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:34:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:34:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:34:40 ERROR: BUSCO analysis failed! 2025-11-24 04:34:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:37:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:37:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:37:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:37:23 ERROR: BUSCO analysis failed! 2025-11-24 04:37:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:47:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:47:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:47:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:47:14 ERROR: BUSCO analysis failed! 2025-11-24 04:47:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:54:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:54:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:54:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:54:00 ERROR: BUSCO analysis failed! 2025-11-24 04:54:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:56:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:56:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:56:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:56:55 ERROR: BUSCO analysis failed! 2025-11-24 04:56:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 05:00:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 05:00:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 05:00:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 05:00:30 ERROR: BUSCO analysis failed! 2025-11-24 05:00:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 05:04:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 05:04:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 05:04:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 05:04:11 ERROR: BUSCO analysis failed! 2025-11-24 05:04:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:33:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:33:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:33:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:33:42 ERROR: BUSCO analysis failed! 2025-11-24 02:33:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:49:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:49:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:49:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:49:19 ERROR: BUSCO analysis failed! 2025-11-24 02:49:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:57:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:57:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:57:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:57:48 ERROR: BUSCO analysis failed! 2025-11-24 02:57:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:02:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:02:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:02:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:02:22 ERROR: BUSCO analysis failed! 2025-11-24 03:02:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:12:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:12:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:12:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:12:26 ERROR: BUSCO analysis failed! 2025-11-24 03:12:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:16:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:16:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:16:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:16:18 ERROR: BUSCO analysis failed! 2025-11-24 03:16:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:30:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:30:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:30:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:30:24 ERROR: BUSCO analysis failed! 2025-11-24 03:30:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:35:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:35:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:35:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:35:47 ERROR: BUSCO analysis failed! 2025-11-24 03:35:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:01:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:01:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:01:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:01:30 ERROR: BUSCO analysis failed! 2025-11-24 04:01:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:09:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:09:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:09:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:09:57 ERROR: BUSCO analysis failed! 2025-11-24 04:09:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:16:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:16:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:16:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:16:55 ERROR: BUSCO analysis failed! 2025-11-24 04:16:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:19:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:19:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:19:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:19:41 ERROR: BUSCO analysis failed! 2025-11-24 04:19:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:23:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:23:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:23:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:23:37 ERROR: BUSCO analysis failed! 2025-11-24 04:23:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:31:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:31:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:31:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:31:05 ERROR: BUSCO analysis failed! 2025-11-24 04:31:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:35:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:35:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:35:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:35:07 ERROR: BUSCO analysis failed! 2025-11-24 04:35:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:50:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:50:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:50:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:50:03 ERROR: BUSCO analysis failed! 2025-11-24 04:50:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:30:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:30:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:30:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:30:33 ERROR: BUSCO analysis failed! 2025-11-24 02:30:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:40:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:40:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:40:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:40:19 ERROR: BUSCO analysis failed! 2025-11-24 02:40:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:52:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 02:52:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:52:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 02:52:10 ERROR: BUSCO analysis failed! 2025-11-24 02:52:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:21:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:21:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:21:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:21:57 ERROR: BUSCO analysis failed! 2025-11-24 03:21:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:24:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:24:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:24:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:24:34 ERROR: BUSCO analysis failed! 2025-11-24 03:24:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 03:27:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 03:27:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:27:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 03:27:29 ERROR: BUSCO analysis failed! 2025-11-24 03:27:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 02:30:07 ERROR: The character "/" is present in the fasta header >TE_00000000#
Show full stderr2025-11-24 02:30:07 ERROR: The character "/" is present in the fasta header >TE_00000000#DNA/DTC, which will crash Reader. Please clean the header of your input file. 2025-11-24 02:30:07 ERROR: BUSCO analysis failed! 2025-11-24 02:30:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 06:36:30 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-11-24 06:36:30 ERROR: The input file does not contain nucleotide sequences. 2025-11-24 06:36:30 ERROR: BUSCO analysis failed! 2025-11-24 06:36:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 06:58:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 06:58:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 06:58:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 06:58:40 ERROR: BUSCO analysis failed! 2025-11-24 06:58:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 04:08:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 04:08:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:08:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 04:08:37 ERROR: BUSCO analysis failed! 2025-11-24 04:08:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 09:10:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 09:10:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:10:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:10:48 ERROR: BUSCO analysis failed! 2025-11-24 09:10:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:12:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:12:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:12:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:12:34 ERROR: BUSCO analysis failed! 2025-11-24 10:12:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:22:23 ERROR: Please provide a protein file as input
Show full stderr2025-11-24 10:22:23 ERROR: Please provide a protein file as input 2025-11-24 10:22:23 ERROR: BUSCO analysis failed! 2025-11-24 10:22:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 07:27:43 ERROR: Please provide a protein file as input
Show full stderr2025-11-24 07:27:43 ERROR: Please provide a protein file as input 2025-11-24 07:27:43 ERROR: BUSCO analysis failed! 2025-11-24 07:27:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/ocean/projects/mcb140028p/xcgalaxy/main/staging/72829629/tool_script.sh: line 23: 45 Kill
Show full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72829629/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'nematoda_odb10' --miniprot
12025-11-24 08:16:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 08:16:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 08:16:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 08:16:20 ERROR: BUSCO analysis failed! 2025-11-24 08:16:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 12:41:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 12:41:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 12:41:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 12:41:59 ERROR: BUSCO analysis failed! 2025-11-24 12:41:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 09:46:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 09:46:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:46:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:46:24 ERROR: BUSCO analysis failed! 2025-11-24 09:46:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:18:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:18:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:18:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:18:41 ERROR: BUSCO analysis failed! 2025-11-24 10:18:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:25:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:25:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:25:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:25:07 ERROR: BUSCO analysis failed! 2025-11-24 10:25:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 13:26:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 13:26:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 13:26:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 13:26:32 ERROR: BUSCO analysis failed! 2025-11-24 13:26:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:38:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:38:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:38:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:38:32 ERROR: BUSCO analysis failed! 2025-11-24 10:38:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 13:57:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 13:57:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 13:57:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 13:57:25 ERROR: BUSCO analysis failed! 2025-11-24 13:57:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:03:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:03:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:03:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:03:16 ERROR: BUSCO analysis failed! 2025-11-24 11:03:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:09:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:09:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:09:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:09:28 ERROR: BUSCO analysis failed! 2025-11-24 11:09:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:09:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:09:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:09:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:09:53 ERROR: BUSCO analysis failed! 2025-11-24 11:09:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 12:42:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 12:42:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 12:42:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 12:42:01 ERROR: BUSCO analysis failed! 2025-11-24 12:42:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:25:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:25:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:25:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:25:09 ERROR: BUSCO analysis failed! 2025-11-24 10:25:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 13:39:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 13:39:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 13:39:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 13:39:29 ERROR: BUSCO analysis failed! 2025-11-24 13:39:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:44:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:44:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:44:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:44:54 ERROR: BUSCO analysis failed! 2025-11-24 10:44:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:51:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:51:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:51:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:51:02 ERROR: BUSCO analysis failed! 2025-11-24 10:51:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:16:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:16:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:16:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:16:19 ERROR: BUSCO analysis failed! 2025-11-24 11:16:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:16:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:16:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:16:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:16:39 ERROR: BUSCO analysis failed! 2025-11-24 11:16:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:29:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:29:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:29:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:29:50 ERROR: BUSCO analysis failed! 2025-11-24 11:29:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 14:31:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 14:31:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 14:31:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 14:31:12 ERROR: BUSCO analysis failed! 2025-11-24 14:31:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:05:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:05:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:05:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:05:51 ERROR: BUSCO analysis failed! 2025-11-24 10:05:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:05:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:05:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:05:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:05:50 ERROR: BUSCO analysis failed! 2025-11-24 10:05:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:38:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:38:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:38:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:38:08 ERROR: BUSCO analysis failed! 2025-11-24 10:38:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:50:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:50:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:50:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:50:34 ERROR: BUSCO analysis failed! 2025-11-24 10:50:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:03:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:03:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:03:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:03:37 ERROR: BUSCO analysis failed! 2025-11-24 11:03:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:22:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:22:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:22:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:22:46 ERROR: BUSCO analysis failed! 2025-11-24 11:22:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:29:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:29:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:29:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:29:17 ERROR: BUSCO analysis failed! 2025-11-24 11:29:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 14:30:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 14:30:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 14:30:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 14:30:25 ERROR: BUSCO analysis failed! 2025-11-24 14:30:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:35:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:35:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:35:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:35:36 ERROR: BUSCO analysis failed! 2025-11-24 11:35:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:36:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:36:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:36:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:36:05 ERROR: BUSCO analysis failed! 2025-11-24 11:36:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:42:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:42:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:42:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:42:22 ERROR: BUSCO analysis failed! 2025-11-24 11:42:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:50:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:50:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:50:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:50:08 ERROR: BUSCO analysis failed! 2025-11-24 11:50:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:55:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:55:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:55:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:55:53 ERROR: BUSCO analysis failed! 2025-11-24 11:55:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:56:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:56:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:56:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:56:27 ERROR: BUSCO analysis failed! 2025-11-24 11:56:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 09:46:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 09:46:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:46:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:46:25 ERROR: BUSCO analysis failed! 2025-11-24 09:46:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 09:59:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 09:59:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:59:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:59:22 ERROR: BUSCO analysis failed! 2025-11-24 09:59:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 09:59:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 09:59:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:59:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 09:59:21 ERROR: BUSCO analysis failed! 2025-11-24 09:59:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:18:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:18:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:18:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:18:39 ERROR: BUSCO analysis failed! 2025-11-24 10:18:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:44:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:44:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:44:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:44:23 ERROR: BUSCO analysis failed! 2025-11-24 10:44:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:56:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:56:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:56:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:56:56 ERROR: BUSCO analysis failed! 2025-11-24 10:56:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 10:57:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 10:57:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:57:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 10:57:15 ERROR: BUSCO analysis failed! 2025-11-24 10:57:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:16:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:16:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:16:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:16:34 ERROR: BUSCO analysis failed! 2025-11-24 11:16:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:41:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:41:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:41:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:41:51 ERROR: BUSCO analysis failed! 2025-11-24 11:41:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:49:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:49:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:49:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:49:15 ERROR: BUSCO analysis failed! 2025-11-24 11:49:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 11:22:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 11:22:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:22:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 11:22:51 ERROR: BUSCO analysis failed! 2025-11-24 11:22:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 13:35:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 13:35:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-24 13:35:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-24 13:35:01 ERROR: BUSCO analysis failed! 2025-11-24 13:35:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 18:50:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 18:50:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-24 18:50:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-24 18:50:17 ERROR: BUSCO analysis failed! 2025-11-24 18:50:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 12:34:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 12:34:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-24 12:34:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-24 12:34:47 ERROR: BUSCO analysis failed! 2025-11-24 12:34:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 15:37:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 15:37:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-24 15:37:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-24 15:37:32 ERROR: BUSCO analysis failed! 2025-11-24 15:37:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 05:30:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 05:30:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 05:30:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 05:30:30 ERROR: BUSCO analysis failed! 2025-11-25 05:30:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 21:30:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 21:30:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-24 21:30:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-24 21:30:39 ERROR: BUSCO analysis failed! 2025-11-24 21:30:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-24 22:05:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-24 22:05:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 22:05:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-24 22:05:06 ERROR: BUSCO analysis failed! 2025-11-24 22:05:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72853602/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72853602/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot
12025-11-25 01:18:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 01:18:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 01:18:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 01:18:25 ERROR: BUSCO analysis failed! 2025-11-25 01:18:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 01:45:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 01:45:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-25 01:45:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-25 01:45:41 ERROR: BUSCO analysis failed! 2025-11-25 01:45:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/jetstream2/scratch/main/jobs/72856041/tool_script.sh: line 23: 31 Killed
Show full stderr/jetstream2/scratch/main/jobs/72856041/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot
12025-11-25 04:35:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 04:35:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 04:35:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 04:35:36 ERROR: BUSCO analysis failed! 2025-11-25 04:35:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 04:35:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 04:35:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 04:35:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 04:35:34 ERROR: BUSCO analysis failed! 2025-11-25 04:35:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 09:34:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 09:34:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 09:34:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 09:34:30 ERROR: BUSCO analysis failed! 2025-11-25 09:34:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 01:35:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 01:35:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 01:35:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 01:35:20 ERROR: BUSCO analysis failed! 2025-11-25 01:35:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 01:35:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 01:35:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 01:35:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 01:35:13 ERROR: BUSCO analysis failed! 2025-11-25 01:35:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 04:35:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 04:35:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 04:35:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-11-25 04:35:49 ERROR: BUSCO analysis failed! 2025-11-25 04:35:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 05:15:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 05:15:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-25 05:15:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-25 05:15:42 ERROR: BUSCO analysis failed! 2025-11-25 05:15:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 05:22:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 05:22:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-25 05:22:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-25 05:22:30 ERROR: BUSCO analysis failed! 2025-11-25 05:22:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 10:56:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 10:56:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-25 10:56:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-25 10:56:18 ERROR: BUSCO analysis failed! 2025-11-25 10:56:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 11:08:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-25 11:08:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-25 11:08:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-25 11:08:00 ERROR: BUSCO analysis failed! 2025-11-25 11:08:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 14:41:17 ERROR: Duplicate of sequence >Sim in input file
Show full stderr2025-11-25 14:41:17 ERROR: Duplicate of sequence >Sim in input file 2025-11-25 14:41:17 ERROR: BUSCO analysis failed! 2025-11-25 14:41:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 14:40:38 ERROR: Duplicate of sequence >Sim in input file
Show full stderr2025-11-25 14:40:38 ERROR: Duplicate of sequence >Sim in input file 2025-11-25 14:40:38 ERROR: BUSCO analysis failed! 2025-11-25 14:40:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-25 14:40:56 ERROR: Duplicate of sequence >Sim in input file
Show full stderr2025-11-25 14:40:56 ERROR: Duplicate of sequence >Sim in input file 2025-11-25 14:40:56 ERROR: BUSCO analysis failed! 2025-11-25 14:40:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-26 01:56:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-26 01:56:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-26 01:56:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-26 01:56:30 ERROR: BUSCO analysis failed! 2025-11-26 01:56:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-26 09:23:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-26 09:23:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-26 09:23:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-26 09:23:16 ERROR: BUSCO analysis failed! 2025-11-26 09:23:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-26 09:38:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-26 09:38:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-26 09:38:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-26 09:38:32 ERROR: BUSCO analysis failed! 2025-11-26 09:38:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-26 13:52:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-26 13:52:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-26 13:52:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-26 13:52:46 ERROR: BUSCO analysis failed! 2025-11-26 13:52:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-26 18:51:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-26 18:51:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-26 18:51:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-26 18:51:56 ERROR: BUSCO analysis failed! 2025-11-26 18:51:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-26 14:05:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-26 14:05:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-26 14:05:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-26 14:05:28 ERROR: BUSCO analysis failed! 2025-11-26 14:05:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-26 14:15:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-26 14:15:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-26 14:15:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-26 14:15:01 ERROR: BUSCO analysis failed! 2025-11-26 14:15:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-26 14:15:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-26 14:15:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-26 14:15:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-26 14:15:28 ERROR: BUSCO analysis failed! 2025-11-26 14:15:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-26 20:09:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-26 20:09:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-26 20:09:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-26 20:09:20 ERROR: BUSCO analysis failed! 2025-11-26 20:09:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 09:46:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 09:46:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 09:46:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 09:46:09 ERROR: BUSCO analysis failed! 2025-11-27 09:46:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 09:46:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 09:46:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 09:46:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 09:46:29 ERROR: BUSCO analysis failed! 2025-11-27 09:46:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 04:57:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 04:57:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 04:57:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 04:57:19 ERROR: BUSCO analysis failed! 2025-11-27 04:57:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 06:13:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 06:13:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-27 06:13:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-11-27 06:13:58 ERROR: BUSCO analysis failed! 2025-11-27 06:13:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:22:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:22:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-27 11:22:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-27 11:22:29 ERROR: BUSCO analysis failed! 2025-11-27 11:22:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 06:46:35 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 06:46:35 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-27 06:46:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-27 06:46:35 ERROR: BUSCO analysis failed! 2025-11-27 06:46:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 12:55:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 12:55:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-27 12:55:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-11-27 12:55:02 ERROR: BUSCO analysis failed! 2025-11-27 12:55:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 15:35:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 15:35:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 15:35:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 15:35:02 ERROR: BUSCO analysis failed! 2025-11-27 15:35:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 15:41:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 15:41:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 15:41:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 15:41:21 ERROR: BUSCO analysis failed! 2025-11-27 15:41:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 15:43:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 15:43:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 15:43:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 15:43:50 ERROR: BUSCO analysis failed! 2025-11-27 15:43:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 10:38:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 10:38:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 10:38:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 10:38:39 ERROR: BUSCO analysis failed! 2025-11-27 10:38:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 07:47:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 07:47:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 07:47:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 07:47:27 ERROR: BUSCO analysis failed! 2025-11-27 07:47:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:05:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:05:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:05:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:05:33 ERROR: BUSCO analysis failed! 2025-11-27 11:05:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 08:08:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 08:08:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 08:08:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 08:08:15 ERROR: BUSCO analysis failed! 2025-11-27 08:08:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 16:18:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 16:18:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:18:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:18:37 ERROR: BUSCO analysis failed! 2025-11-27 16:18:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:22:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:22:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:22:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:22:41 ERROR: BUSCO analysis failed! 2025-11-27 11:22:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:26:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:26:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:26:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:26:21 ERROR: BUSCO analysis failed! 2025-11-27 11:26:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:30:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:30:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:30:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:30:45 ERROR: BUSCO analysis failed! 2025-11-27 11:30:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 16:42:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 16:42:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:42:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:42:23 ERROR: BUSCO analysis failed! 2025-11-27 16:42:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 16:45:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 16:45:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:45:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:45:11 ERROR: BUSCO analysis failed! 2025-11-27 16:45:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 16:53:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 16:53:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:53:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:53:37 ERROR: BUSCO analysis failed! 2025-11-27 16:53:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 16:59:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 16:59:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:59:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:59:23 ERROR: BUSCO analysis failed! 2025-11-27 16:59:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 09:02:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 09:02:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 09:02:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 09:02:34 ERROR: BUSCO analysis failed! 2025-11-27 09:02:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 17:05:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 17:05:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 17:05:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 17:05:23 ERROR: BUSCO analysis failed! 2025-11-27 17:05:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 09:08:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 09:08:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 09:08:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 09:08:21 ERROR: BUSCO analysis failed! 2025-11-27 09:08:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 17:10:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 17:10:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 17:10:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 17:10:53 ERROR: BUSCO analysis failed! 2025-11-27 17:10:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 07:50:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 07:50:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 07:50:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 07:50:08 ERROR: BUSCO analysis failed! 2025-11-27 07:50:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 07:52:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 07:52:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 07:52:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 07:52:46 ERROR: BUSCO analysis failed! 2025-11-27 07:52:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 15:55:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 15:55:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 15:55:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 15:55:34 ERROR: BUSCO analysis failed! 2025-11-27 15:55:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 10:59:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 10:59:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 10:59:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 10:59:28 ERROR: BUSCO analysis failed! 2025-11-27 10:59:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:02:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:02:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:02:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:02:05 ERROR: BUSCO analysis failed! 2025-11-27 11:02:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:11:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:11:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:11:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:11:51 ERROR: BUSCO analysis failed! 2025-11-27 11:11:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:15:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:15:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:15:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:15:58 ERROR: BUSCO analysis failed! 2025-11-27 11:15:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:33:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:33:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:33:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:33:15 ERROR: BUSCO analysis failed! 2025-11-27 11:33:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:37:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:37:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:37:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:37:09 ERROR: BUSCO analysis failed! 2025-11-27 11:37:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:39:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:39:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:39:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:39:56 ERROR: BUSCO analysis failed! 2025-11-27 11:39:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:48:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:48:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:48:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:48:33 ERROR: BUSCO analysis failed! 2025-11-27 11:48:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 16:51:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 16:51:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:51:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 16:51:01 ERROR: BUSCO analysis failed! 2025-11-27 16:51:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 11:56:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 11:56:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:56:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 11:56:59 ERROR: BUSCO analysis failed! 2025-11-27 11:56:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-27 09:14:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-27 09:14:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 09:14:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-27 09:14:59 ERROR: BUSCO analysis failed! 2025-11-27 09:14:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1CRITICAL: Unhandled exception occurred:
Show full stderrCRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/run_BUSCO.py", line 180, in run_BUSCO config_manager.load_busco_config(sys.argv) File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/BuscoLogger.py", line 55, in wrapped_func self.retval = func(*args, **kwargs) File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/ConfigManager.py", line 47, in load_busco_config self.config.validate() File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/BuscoConfig.py", line 248, in validate self._init_downloader() File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/BuscoConfig.py", line 49, in _init_downloader self.downloader = BuscoDownloadManager(self) File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/BuscoDownloadManager.py", line 49, in __init__ self._load_versions() File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/BuscoDownloadManager.py", line 59, in _load_versions with open(versions_file, "r") as v_file: FileNotFoundError: [Errno 2] No such file or directory: '/jetstream2/scratch/main/jobs/72927930/working/busco_downloads/file_versions.tsv'
1ERROR: Prodigal did not recognize any genes matching the dataset proteobacteria_odb10 in
Show full stderrERROR: Prodigal did not recognize any genes matching the dataset proteobacteria_odb10 in the input file. If this is unexpected, check your input file and your installation of Prodigal ERROR: BUSCO analysis failed ! ERROR: Check the logs, read the user guide, and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72939711/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72939711/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'mammalia_odb10' --miniprot
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72939716/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72939716/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'mammalia_odb10' --miniprot
12025-11-28 05:01:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-28 05:01:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-28 05:01:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-28 05:01:40 ERROR: BUSCO analysis failed! 2025-11-28 05:01:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/ocean/projects/mcb140028p/xcgalaxy/main/staging/72946291/tool_script.sh: line 23: 45 Kill
Show full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72946291/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'metazoa_odb10' --miniprot
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72946308/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72946308/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'mollusca_odb10' --miniprot
12025-11-28 16:32:35 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-28 16:32:35 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-28 16:32:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-28 16:32:35 ERROR: BUSCO analysis failed! 2025-11-28 16:32:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-28 18:34:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-28 18:34:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-28 18:34:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-28 18:34:51 ERROR: BUSCO analysis failed! 2025-11-28 18:34:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-28 13:42:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-28 13:42:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-28 13:42:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-28 13:42:26 ERROR: BUSCO analysis failed! 2025-11-28 13:42:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/ocean/projects/mcb140028p/xcgalaxy/main/staging/72953711/tool_script.sh: line 23: 45 Kill
Show full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72953711/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'ascomycota_odb10' --miniprot
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72953992/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72953992/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'ascomycota_odb10' --miniprot
1/jetstream2/scratch/main/jobs/72954118/tool_script.sh: line 23: 31 Killed
Show full stderr/jetstream2/scratch/main/jobs/72954118/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'ascomycota_odb10' --miniprot
1/anvil/scratch/x-xcgalaxy/main/staging/72955511/tool_script.sh: line 23: 48 Killed
Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72955511/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'metazoa_odb10' --miniprot
1/ocean/projects/mcb140028p/xcgalaxy/main/staging/72955512/tool_script.sh: line 23: 45 Kill
Show full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72955512/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'mollusca_odb10' --miniprot
12025-11-29 10:02:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-29 10:02:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-29 10:02:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-29 10:02:01 ERROR: BUSCO analysis failed! 2025-11-29 10:02:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-29 15:24:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-29 15:24:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/campylobacterales_odb10/refseq_db.faa.gz' 2025-11-29 15:24:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/campylobacterales_odb10/refseq_db.faa.gz' 2025-11-29 15:24:14 ERROR: BUSCO analysis failed! 2025-11-29 15:24:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-30 07:32:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-30 07:32:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 07:32:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 07:32:11 ERROR: BUSCO analysis failed! 2025-11-30 07:32:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-30 07:32:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-30 07:32:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 07:32:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 07:32:26 ERROR: BUSCO analysis failed! 2025-11-30 07:32:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-30 04:31:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-30 04:31:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 04:31:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 04:31:51 ERROR: BUSCO analysis failed! 2025-11-30 04:31:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-30 04:46:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-30 04:46:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 04:46:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 04:46:57 ERROR: BUSCO analysis failed! 2025-11-30 04:46:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-30 21:36:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-30 21:36:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 21:36:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 21:36:57 ERROR: BUSCO analysis failed! 2025-11-30 21:36:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-11-30 21:51:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-11-30 21:51:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 21:51:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-11-30 21:51:58 ERROR: BUSCO analysis failed! 2025-11-30 21:51:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 06:13:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 06:13:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 06:13:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 06:13:59 ERROR: BUSCO analysis failed! 2025-12-01 06:13:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 06:14:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 06:14:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 06:14:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 06:14:09 ERROR: BUSCO analysis failed! 2025-12-01 06:14:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 11:46:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 11:46:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 11:46:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 11:46:43 ERROR: BUSCO analysis failed! 2025-12-01 11:46:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 16:24:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 16:24:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 16:24:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 16:24:33 ERROR: BUSCO analysis failed! 2025-12-01 16:24:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 16:48:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 16:48:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 16:48:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 16:48:52 ERROR: BUSCO analysis failed! 2025-12-01 16:48:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 11:49:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 11:49:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 11:49:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 11:49:29 ERROR: BUSCO analysis failed! 2025-12-01 11:49:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 08:49:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 08:49:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 08:49:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 08:49:16 ERROR: BUSCO analysis failed! 2025-12-01 08:49:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 11:52:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 11:52:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 11:52:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 11:52:20 ERROR: BUSCO analysis failed! 2025-12-01 11:52:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 11:52:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 11:52:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 11:52:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 11:52:21 ERROR: BUSCO analysis failed! 2025-12-01 11:52:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 11:55:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 11:55:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 11:55:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 11:55:58 ERROR: BUSCO analysis failed! 2025-12-01 11:55:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 09:08:18 ERROR: Please provide a protein file as input
Show full stderr2025-12-01 09:08:18 ERROR: Please provide a protein file as input 2025-12-01 09:08:18 ERROR: BUSCO analysis failed! 2025-12-01 09:08:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 12:09:22 ERROR: Please provide a protein file as input
Show full stderr2025-12-01 12:09:22 ERROR: Please provide a protein file as input 2025-12-01 12:09:22 ERROR: BUSCO analysis failed! 2025-12-01 12:09:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 12:09:14 ERROR: Please provide a protein file as input
Show full stderr2025-12-01 12:09:14 ERROR: Please provide a protein file as input 2025-12-01 12:09:14 ERROR: BUSCO analysis failed! 2025-12-01 12:09:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 18:21:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 18:21:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 18:21:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 18:21:28 ERROR: BUSCO analysis failed! 2025-12-01 18:21:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 13:23:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 13:23:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 13:23:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 13:23:04 ERROR: BUSCO analysis failed! 2025-12-01 13:23:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 10:22:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 10:22:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 10:22:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 10:22:09 ERROR: BUSCO analysis failed! 2025-12-01 10:22:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 18:21:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 18:21:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 18:21:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 18:21:54 ERROR: BUSCO analysis failed! 2025-12-01 18:21:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 18:22:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 18:22:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 18:22:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 18:22:12 ERROR: BUSCO analysis failed! 2025-12-01 18:22:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 18:50:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 18:50:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 18:50:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 18:50:55 ERROR: BUSCO analysis failed! 2025-12-01 18:50:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-01 18:51:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-01 18:51:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 18:51:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-01 18:51:21 ERROR: BUSCO analysis failed! 2025-12-01 18:51:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 01:51:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 01:51:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 01:51:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 01:51:36 ERROR: BUSCO analysis failed! 2025-12-02 01:51:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 07:16:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 07:16:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 07:16:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 07:16:41 ERROR: BUSCO analysis failed! 2025-12-02 07:16:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 02:27:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 02:27:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 02:27:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 02:27:59 ERROR: BUSCO analysis failed! 2025-12-02 02:27:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 07:44:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 07:44:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 07:44:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 07:44:10 ERROR: BUSCO analysis failed! 2025-12-02 07:44:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 02:47:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 02:47:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 02:47:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 02:47:19 ERROR: BUSCO analysis failed! 2025-12-02 02:47:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 08:34:07 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-12-02 08:34:07 ERROR: The input file does not contain nucleotide sequences. 2025-12-02 08:34:07 ERROR: BUSCO analysis failed! 2025-12-02 08:34:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 05:16:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 05:16:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 05:16:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 05:16:21 ERROR: BUSCO analysis failed! 2025-12-02 05:16:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 12:58:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 12:58:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 12:58:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 12:58:38 ERROR: BUSCO analysis failed! 2025-12-02 12:58:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 10:31:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 10:31:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz' 2025-12-02 10:31:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz' 2025-12-02 10:31:19 ERROR: BUSCO analysis failed! 2025-12-02 10:31:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 10:31:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 10:31:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz' 2025-12-02 10:31:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz' 2025-12-02 10:31:18 ERROR: BUSCO analysis failed! 2025-12-02 10:31:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 15:26:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 15:26:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz' 2025-12-02 15:26:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz' 2025-12-02 15:26:51 ERROR: BUSCO analysis failed! 2025-12-02 15:26:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 14:12:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 14:12:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 14:12:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 14:12:33 ERROR: BUSCO analysis failed! 2025-12-02 14:12:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 14:27:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 14:27:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 14:27:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 14:27:51 ERROR: BUSCO analysis failed! 2025-12-02 14:27:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 15:11:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 15:11:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 15:11:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 15:11:47 ERROR: BUSCO analysis failed! 2025-12-02 15:11:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 12:10:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 12:10:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 12:10:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 12:10:26 ERROR: BUSCO analysis failed! 2025-12-02 12:10:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 12:21:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 12:21:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 12:21:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 12:21:02 ERROR: BUSCO analysis failed! 2025-12-02 12:21:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 12:31:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 12:31:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-02 12:31:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-02 12:31:15 ERROR: BUSCO analysis failed! 2025-12-02 12:31:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 15:54:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 15:54:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 15:54:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 15:54:02 ERROR: BUSCO analysis failed! 2025-12-02 15:54:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-02 17:30:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-02 17:30:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 17:30:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-02 17:30:33 ERROR: BUSCO analysis failed! 2025-12-02 17:30:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 00:53:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 00:53:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 00:53:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 00:53:55 ERROR: BUSCO analysis failed! 2025-12-03 00:53:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 04:12:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 04:12:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 04:12:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 04:12:21 ERROR: BUSCO analysis failed! 2025-12-03 04:12:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 01:33:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 01:33:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 01:33:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 01:33:15 ERROR: BUSCO analysis failed! 2025-12-03 01:33:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 04:42:46 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-12-03 04:42:46 ERROR: The input file does not contain nucleotide sequences. 2025-12-03 04:42:46 ERROR: BUSCO analysis failed! 2025-12-03 04:42:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 05:58:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 05:58:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 05:58:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 05:58:00 ERROR: BUSCO analysis failed! 2025-12-03 05:58:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 08:11:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 08:11:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 08:11:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 08:11:33 ERROR: BUSCO analysis failed! 2025-12-03 08:11:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 09:21:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 09:21:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 09:21:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 09:21:23 ERROR: BUSCO analysis failed! 2025-12-03 09:21:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 12:47:05 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-12-03 12:47:05 ERROR: The input file does not contain nucleotide sequences. 2025-12-03 12:47:05 ERROR: BUSCO analysis failed! 2025-12-03 12:47:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 21:19:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 21:19:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/vibrionales_odb10/refseq_db.faa.gz' 2025-12-03 21:19:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/vibrionales_odb10/refseq_db.faa.gz' 2025-12-03 21:19:13 ERROR: BUSCO analysis failed! 2025-12-03 21:19:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-03 21:31:46 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-03 21:31:46 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 21:31:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-03 21:31:46 ERROR: BUSCO analysis failed! 2025-12-03 21:31:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 05:37:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 05:37:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 05:37:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 05:37:00 ERROR: BUSCO analysis failed! 2025-12-04 05:37:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-12 22:22:40 ERROR: Metaeuk did not recognize any genes matching the dataset tetra
Show full stderr2025-12-12 22:22:40 ERROR: Metaeuk did not recognize any genes matching the dataset tetrapoda_odb10 in the input file. If this is unexpected, check your input file and your installation of Metaeuk 2025-12-12 22:22:40 ERROR: BUSCO analysis failed! 2025-12-12 22:22:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 05:53:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 05:53:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 05:53:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 05:53:21 ERROR: BUSCO analysis failed! 2025-12-04 05:53:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 05:55:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 05:55:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 05:55:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 05:55:42 ERROR: BUSCO analysis failed! 2025-12-04 05:55:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 02:52:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 02:52:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 02:52:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 02:52:40 ERROR: BUSCO analysis failed! 2025-12-04 02:52:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 05:09:03 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-12-04 05:09:03 ERROR: The input file does not contain nucleotide sequences. 2025-12-04 05:09:03 ERROR: BUSCO analysis failed! 2025-12-04 05:09:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 08:09:47 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-12-04 08:09:47 ERROR: The input file does not contain nucleotide sequences. 2025-12-04 08:09:47 ERROR: BUSCO analysis failed! 2025-12-04 08:09:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 06:20:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 06:20:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 06:20:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 06:20:37 ERROR: BUSCO analysis failed! 2025-12-04 06:20:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 06:24:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 06:24:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 06:24:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 06:24:39 ERROR: BUSCO analysis failed! 2025-12-04 06:24:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 03:20:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 03:20:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 03:20:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 03:20:43 ERROR: BUSCO analysis failed! 2025-12-04 03:20:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 06:23:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 06:23:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 06:23:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 06:23:08 ERROR: BUSCO analysis failed! 2025-12-04 06:23:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 06:22:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 06:22:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 06:22:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 06:22:10 ERROR: BUSCO analysis failed! 2025-12-04 06:22:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 06:27:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 06:27:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 06:27:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 06:27:43 ERROR: BUSCO analysis failed! 2025-12-04 06:27:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 06:31:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 06:31:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-04 06:31:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-04 06:31:19 ERROR: BUSCO analysis failed! 2025-12-04 06:31:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 06:30:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 06:30:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-04 06:30:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-04 06:30:13 ERROR: BUSCO analysis failed! 2025-12-04 06:30:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 06:33:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 06:33:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-04 06:33:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-04 06:33:12 ERROR: BUSCO analysis failed! 2025-12-04 06:33:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 06:33:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 06:33:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz' 2025-12-04 06:33:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz' 2025-12-04 06:33:13 ERROR: BUSCO analysis failed! 2025-12-04 06:33:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 06:50:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 06:50:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-04 06:50:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-04 06:50:38 ERROR: BUSCO analysis failed! 2025-12-04 06:50:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 08:26:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 08:26:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-12-04 08:26:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-12-04 08:26:39 ERROR: BUSCO analysis failed! 2025-12-04 08:26:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 08:51:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 08:51:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 08:51:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 08:51:41 ERROR: BUSCO analysis failed! 2025-12-04 08:51:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 08:56:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 08:56:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 08:56:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 08:56:16 ERROR: BUSCO analysis failed! 2025-12-04 08:56:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 09:03:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 09:03:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 09:03:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 09:03:47 ERROR: BUSCO analysis failed! 2025-12-04 09:03:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 09:12:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 09:12:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-12-04 09:12:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz' 2025-12-04 09:12:48 ERROR: BUSCO analysis failed! 2025-12-04 09:12:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 10:18:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 10:18:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 10:18:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 10:18:49 ERROR: BUSCO analysis failed! 2025-12-04 10:18:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 17:40:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 17:40:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 17:40:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 17:40:00 ERROR: BUSCO analysis failed! 2025-12-04 17:40:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-04 22:56:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-04 22:56:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 22:56:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-04 22:56:30 ERROR: BUSCO analysis failed! 2025-12-04 22:56:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 01:23:44 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 01:23:44 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 01:23:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 01:23:44 ERROR: BUSCO analysis failed! 2025-12-05 01:23:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 01:43:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 01:43:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 01:43:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 01:43:10 ERROR: BUSCO analysis failed! 2025-12-05 01:43:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 07:11:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 07:11:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 07:11:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 07:11:17 ERROR: BUSCO analysis failed! 2025-12-05 07:11:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 04:51:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 04:51:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 04:51:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 04:51:52 ERROR: BUSCO analysis failed! 2025-12-05 04:51:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 07:53:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 07:53:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 07:53:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 07:53:39 ERROR: BUSCO analysis failed! 2025-12-05 07:53:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 07:53:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 07:53:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 07:53:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 07:53:13 ERROR: BUSCO analysis failed! 2025-12-05 07:53:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 07:53:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 07:53:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 07:53:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 07:53:16 ERROR: BUSCO analysis failed! 2025-12-05 07:53:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 07:56:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 07:56:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 07:56:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 07:56:20 ERROR: BUSCO analysis failed! 2025-12-05 07:56:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/dev/stdin: line 118: /tmp/tmp.TAqI1GAuur/cmd1: No such file or directory
Show full stderr/dev/stdin: line 118: /tmp/tmp.TAqI1GAuur/cmd1: No such file or directory /dev/stdin: line 6: $CVMFSEXEC_CMDFD: ambiguous redirect /dev/stdin: line 11: /tmp/tmp.TAqI1GAuur/wait2: No such file or directory /dev/stdin: line 14: CVMFSEXEC_CMDFD: ambiguous redirect ERROR : Failed to create user namespace: not allowed to create user namespace 
12025-12-05 09:20:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 09:20:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 09:20:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 09:20:15 ERROR: BUSCO analysis failed! 2025-12-05 09:20:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 19:52:54 ERROR: Please provide a protein file as input
Show full stderr2025-12-05 19:52:54 ERROR: Please provide a protein file as input 2025-12-05 19:52:54 ERROR: BUSCO analysis failed! 2025-12-05 19:52:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 15:31:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 15:31:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 15:31:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 15:31:06 ERROR: BUSCO analysis failed! 2025-12-05 15:31:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 15:33:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 15:33:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 15:33:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 15:33:30 ERROR: BUSCO analysis failed! 2025-12-05 15:33:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 15:40:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 15:40:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 15:40:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 15:40:34 ERROR: BUSCO analysis failed! 2025-12-05 15:40:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 15:56:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 15:56:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 15:56:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 15:56:24 ERROR: BUSCO analysis failed! 2025-12-05 15:56:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-05 16:34:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-05 16:34:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 16:34:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-05 16:34:27 ERROR: BUSCO analysis failed! 2025-12-05 16:34:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-06 06:48:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-06 06:48:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-06 06:48:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-06 06:48:19 ERROR: BUSCO analysis failed! 2025-12-06 06:48:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-06 04:17:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-06 04:17:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-06 04:17:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-06 04:17:30 ERROR: BUSCO analysis failed! 2025-12-06 04:17:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-06 15:02:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-06 15:02:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-06 15:02:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-06 15:02:56 ERROR: BUSCO analysis failed! 2025-12-06 15:02:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-06 18:19:49 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-12-06 18:19:49 ERROR: The input file does not contain nucleotide sequences. 2025-12-06 18:19:49 ERROR: BUSCO analysis failed! 2025-12-06 18:19:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-06 21:12:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-06 21:12:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-06 21:12:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-06 21:12:34 ERROR: BUSCO analysis failed! 2025-12-06 21:12:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-06 21:12:35 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-06 21:12:35 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-06 21:12:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-06 21:12:35 ERROR: BUSCO analysis failed! 2025-12-06 21:12:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-07 00:11:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-07 00:11:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 00:11:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 00:11:00 ERROR: BUSCO analysis failed! 2025-12-07 00:11:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-07 07:16:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-07 07:16:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-07 07:16:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-07 07:16:54 ERROR: BUSCO analysis failed! 2025-12-07 07:16:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-07 11:24:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-07 11:24:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 11:24:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 11:24:25 ERROR: BUSCO analysis failed! 2025-12-07 11:24:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-07 11:25:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-07 11:25:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 11:25:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 11:25:15 ERROR: BUSCO analysis failed! 2025-12-07 11:25:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-07 11:59:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-07 11:59:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 11:59:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 11:59:22 ERROR: BUSCO analysis failed! 2025-12-07 11:59:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-07 12:37:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-07 12:37:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 12:37:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 12:37:42 ERROR: BUSCO analysis failed! 2025-12-07 12:37:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-07 12:37:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-07 12:37:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 12:37:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 12:37:47 ERROR: BUSCO analysis failed! 2025-12-07 12:37:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-07 12:38:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-07 12:38:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 12:38:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-07 12:38:54 ERROR: BUSCO analysis failed! 2025-12-07 12:38:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-07 13:36:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-07 13:36:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-07 13:36:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-07 13:36:27 ERROR: BUSCO analysis failed! 2025-12-07 13:36:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-07 21:45:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-07 21:45:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-07 21:45:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-07 21:45:55 ERROR: BUSCO analysis failed! 2025-12-07 21:45:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 07:15:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 07:15:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:15:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:15:33 ERROR: BUSCO analysis failed! 2025-12-08 07:15:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 07:15:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 07:15:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:15:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:15:32 ERROR: BUSCO analysis failed! 2025-12-08 07:15:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 07:18:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 07:18:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:18:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:18:25 ERROR: BUSCO analysis failed! 2025-12-08 07:18:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 07:16:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 07:16:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:16:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:16:05 ERROR: BUSCO analysis failed! 2025-12-08 07:16:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 07:19:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 07:19:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:19:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:19:19 ERROR: BUSCO analysis failed! 2025-12-08 07:19:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 07:21:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 07:21:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:21:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:21:24 ERROR: BUSCO analysis failed! 2025-12-08 07:21:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 07:30:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 07:30:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:30:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:30:57 ERROR: BUSCO analysis failed! 2025-12-08 07:30:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 07:52:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 07:52:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:52:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:52:29 ERROR: BUSCO analysis failed! 2025-12-08 07:52:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 07:55:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 07:55:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:55:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 07:55:34 ERROR: BUSCO analysis failed! 2025-12-08 07:55:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 08:07:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 08:07:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:07:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:07:26 ERROR: BUSCO analysis failed! 2025-12-08 08:07:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 08:11:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 08:11:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:11:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:11:24 ERROR: BUSCO analysis failed! 2025-12-08 08:11:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 08:08:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 08:08:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:08:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:08:27 ERROR: BUSCO analysis failed! 2025-12-08 08:08:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 08:12:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 08:12:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:12:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:12:28 ERROR: BUSCO analysis failed! 2025-12-08 08:12:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 05:10:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 05:10:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 05:10:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 05:10:30 ERROR: BUSCO analysis failed! 2025-12-08 05:10:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 10:59:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 10:59:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 10:59:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 10:59:49 ERROR: BUSCO analysis failed! 2025-12-08 10:59:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 08:00:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 08:00:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:00:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:00:57 ERROR: BUSCO analysis failed! 2025-12-08 08:00:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 08:08:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 08:08:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:08:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 08:08:11 ERROR: BUSCO analysis failed! 2025-12-08 08:08:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 11:12:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 11:12:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 11:12:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 11:12:17 ERROR: BUSCO analysis failed! 2025-12-08 11:12:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 11:18:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 11:18:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 11:18:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 11:18:29 ERROR: BUSCO analysis failed! 2025-12-08 11:18:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 11:35:14 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 11:35:14 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 11:35:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 11:35:14 ERROR: BUSCO analysis failed! 2025-12-08 11:35:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 11:53:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 11:53:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 11:53:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 11:53:23 ERROR: BUSCO analysis failed! 2025-12-08 11:53:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 14:34:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 14:34:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 14:34:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 14:34:38 ERROR: BUSCO analysis failed! 2025-12-08 14:34:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-08 15:39:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-08 15:39:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 15:39:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-08 15:39:18 ERROR: BUSCO analysis failed! 2025-12-08 15:39:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73189466/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73189466/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot
12025-12-09 05:15:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 05:15:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 05:15:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 05:15:10 ERROR: BUSCO analysis failed! 2025-12-09 05:15:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-09 02:41:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 02:41:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-09 02:41:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-09 02:41:15 ERROR: BUSCO analysis failed! 2025-12-09 02:41:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-09 05:51:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 05:51:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-09 05:51:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-09 05:51:00 ERROR: BUSCO analysis failed! 2025-12-09 05:51:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-09 10:15:55 ERROR: Augustus did not recognize any genes matching the dataset acti
Show full stderr2025-12-09 10:15:55 ERROR: Augustus did not recognize any genes matching the dataset actinopterygii_odb10 in the input file. If this is unexpected, check your input file and your installation of Augustus 2025-12-09 10:15:55 ERROR: BUSCO analysis failed! 2025-12-09 10:15:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-09 07:43:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 07:43:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 07:43:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 07:43:41 ERROR: BUSCO analysis failed! 2025-12-09 07:43:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-09 10:55:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 10:55:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-09 10:55:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-09 10:55:16 ERROR: BUSCO analysis failed! 2025-12-09 10:55:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-09 10:56:03 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 10:56:03 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-09 10:56:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-09 10:56:03 ERROR: BUSCO analysis failed! 2025-12-09 10:56:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-09 10:55:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 10:55:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-09 10:55:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-09 10:55:11 ERROR: BUSCO analysis failed! 2025-12-09 10:55:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-09 10:55:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 10:55:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-09 10:55:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-09 10:55:10 ERROR: BUSCO analysis failed! 2025-12-09 10:55:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-09 12:55:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 12:55:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 12:55:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 12:55:09 ERROR: BUSCO analysis failed! 2025-12-09 12:55:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-09 09:57:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 09:57:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 09:57:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 09:57:37 ERROR: BUSCO analysis failed! 2025-12-09 09:57:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-09 12:18:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-09 12:18:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 12:18:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-09 12:18:12 ERROR: BUSCO analysis failed! 2025-12-09 12:18:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 00:48:57 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 00:48:57 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:48:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:48:57 ERROR: BUSCO analysis failed! 2025-12-10 00:48:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 00:48:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 00:48:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:48:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:48:54 ERROR: BUSCO analysis failed! 2025-12-10 00:48:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 03:55:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 03:55:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 03:55:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 03:55:23 ERROR: BUSCO analysis failed! 2025-12-10 03:55:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 00:54:00 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 00:54:00 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:54:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:54:00 ERROR: BUSCO analysis failed! 2025-12-10 00:54:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 00:56:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 00:56:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:56:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:56:51 ERROR: BUSCO analysis failed! 2025-12-10 00:56:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:07:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:07:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:07:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:07:30 ERROR: BUSCO analysis failed! 2025-12-10 01:07:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:10:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:10:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:10:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:10:06 ERROR: BUSCO analysis failed! 2025-12-10 01:10:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:18:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:18:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:18:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:18:51 ERROR: BUSCO analysis failed! 2025-12-10 01:18:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:21:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:21:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:21:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:21:26 ERROR: BUSCO analysis failed! 2025-12-10 01:21:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:21:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:21:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:21:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:21:54 ERROR: BUSCO analysis failed! 2025-12-10 01:21:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:24:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:24:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:24:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:24:17 ERROR: BUSCO analysis failed! 2025-12-10 01:24:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:39:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:39:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:39:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:39:56 ERROR: BUSCO analysis failed! 2025-12-10 01:39:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 04:59:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 04:59:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 04:59:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 04:59:02 ERROR: BUSCO analysis failed! 2025-12-10 04:59:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 02:09:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 02:09:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:09:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:09:02 ERROR: BUSCO analysis failed! 2025-12-10 02:09:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 02:12:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 02:12:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:12:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:12:11 ERROR: BUSCO analysis failed! 2025-12-10 02:12:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 02:14:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 02:14:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:14:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:14:20 ERROR: BUSCO analysis failed! 2025-12-10 02:14:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 00:54:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 00:54:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:54:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:54:12 ERROR: BUSCO analysis failed! 2025-12-10 00:54:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 00:59:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 00:59:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:59:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:59:23 ERROR: BUSCO analysis failed! 2025-12-10 00:59:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 00:59:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 00:59:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:59:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:59:38 ERROR: BUSCO analysis failed! 2025-12-10 00:59:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:02:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:02:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:02:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:02:11 ERROR: BUSCO analysis failed! 2025-12-10 01:02:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:04:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:04:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:04:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:04:59 ERROR: BUSCO analysis failed! 2025-12-10 01:04:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:10:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:10:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:10:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:10:02 ERROR: BUSCO analysis failed! 2025-12-10 01:10:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 04:26:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 04:26:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 04:26:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 04:26:07 ERROR: BUSCO analysis failed! 2025-12-10 04:26:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:27:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:27:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:27:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:27:16 ERROR: BUSCO analysis failed! 2025-12-10 01:27:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:42:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:42:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:42:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:42:13 ERROR: BUSCO analysis failed! 2025-12-10 01:42:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:50:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:50:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:50:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:50:09 ERROR: BUSCO analysis failed! 2025-12-10 01:50:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:52:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:52:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:52:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:52:55 ERROR: BUSCO analysis failed! 2025-12-10 01:52:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 02:00:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 02:00:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:00:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:00:55 ERROR: BUSCO analysis failed! 2025-12-10 02:00:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 02:04:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 02:04:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:04:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:04:26 ERROR: BUSCO analysis failed! 2025-12-10 02:04:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 02:07:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 02:07:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:07:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:07:08 ERROR: BUSCO analysis failed! 2025-12-10 02:07:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 02:09:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 02:09:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:09:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:09:41 ERROR: BUSCO analysis failed! 2025-12-10 02:09:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 02:11:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 02:11:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:11:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 02:11:43 ERROR: BUSCO analysis failed! 2025-12-10 02:11:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 00:51:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 00:51:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:51:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:51:24 ERROR: BUSCO analysis failed! 2025-12-10 00:51:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 00:51:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 00:51:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:51:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:51:39 ERROR: BUSCO analysis failed! 2025-12-10 00:51:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 00:56:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 00:56:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:56:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 00:56:39 ERROR: BUSCO analysis failed! 2025-12-10 00:56:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:02:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:02:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:02:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:02:05 ERROR: BUSCO analysis failed! 2025-12-10 01:02:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:04:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:04:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:04:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:04:45 ERROR: BUSCO analysis failed! 2025-12-10 01:04:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:07:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:07:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:07:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:07:24 ERROR: BUSCO analysis failed! 2025-12-10 01:07:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:12:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:12:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:12:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:12:45 ERROR: BUSCO analysis failed! 2025-12-10 01:12:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:15:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:15:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:15:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:15:22 ERROR: BUSCO analysis failed! 2025-12-10 01:15:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 01:29:58 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 01:29:58 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:29:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 01:29:58 ERROR: BUSCO analysis failed! 2025-12-10 01:29:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1Traceback (most recent call last):
Show full stderrTraceback (most recent call last): File "/usr/local/bin/busco", line 54, in <module> run_BUSCO.main() File "/usr/local/lib/python3.10/site-packages/busco/run_BUSCO.py", line 497, in main busco_run.run() File "/usr/local/lib/python3.10/site-packages/busco/run_BUSCO.py", line 68, in run self.load_config() File "/usr/local/lib/python3.10/site-packages/busco/run_BUSCO.py", line 60, in load_config self.config_manager.load_busco_config_main() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/ConfigManager.py", line 63, in load_busco_config_main self.config_main.validate() File "/usr/local/lib/python3.10/site-packages/busco/BuscoConfig.py", line 648, in validate self._init_downloader() File "/usr/local/lib/python3.10/site-packages/busco/BuscoConfig.py", line 448, in _init_downloader self.downloader = BuscoDownloadManager(self) File "/usr/local/lib/python3.10/site-packages/busco/BuscoDownloadManager.py", line 50, in __init__ self._create_main_download_dir() File "/usr/local/lib/python3.10/site-packages/busco/BuscoDownloadManager.py", line 68, in _create_main_download_dir os.makedirs(self.local_download_path, exist_ok=True) File "/usr/local/lib/python3.10/os.py", line 215, in makedirs makedirs(head, exist_ok=exist_ok) File "/usr/local/lib/python3.10/os.py", line 215, in makedirs makedirs(head, exist_ok=exist_ok) File "/usr/local/lib/python3.10/os.py", line 225, in makedirs mkdir(name, mode) OSError: [Errno 30] Read-only file system: '/cvmfs/data.galaxyproject.org/byhand'
12025-12-10 09:56:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 09:56:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-10 09:56:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-10 09:56:23 ERROR: BUSCO analysis failed! 2025-12-10 09:56:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 08:28:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 08:28:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 08:28:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 08:28:26 ERROR: BUSCO analysis failed! 2025-12-10 08:28:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 11:39:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 11:39:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz' 2025-12-10 11:39:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz' 2025-12-10 11:39:38 ERROR: BUSCO analysis failed! 2025-12-10 11:39:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 12:50:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 12:50:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-10 12:50:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-10 12:50:04 ERROR: BUSCO analysis failed! 2025-12-10 12:50:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 14:27:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 14:27:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 14:27:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 14:27:06 ERROR: BUSCO analysis failed! 2025-12-10 14:27:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 14:29:53 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-12-10 14:29:53 ERROR: The input file does not contain nucleotide sequences. 2025-12-10 14:29:53 ERROR: BUSCO analysis failed! 2025-12-10 14:29:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 14:43:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 14:43:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/mollicutes_odb10/refseq_db.faa.gz' 2025-12-10 14:43:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/mollicutes_odb10/refseq_db.faa.gz' 2025-12-10 14:43:40 ERROR: BUSCO analysis failed! 2025-12-10 14:43:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 15:59:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 15:59:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 15:59:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 15:59:34 ERROR: BUSCO analysis failed! 2025-12-10 15:59:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 12:11:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 12:11:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 12:11:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 12:11:11 ERROR: BUSCO analysis failed! 2025-12-10 12:11:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 12:11:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 12:11:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 12:11:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 12:11:30 ERROR: BUSCO analysis failed! 2025-12-10 12:11:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 12:33:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 12:33:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 12:33:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 12:33:33 ERROR: BUSCO analysis failed! 2025-12-10 12:33:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 12:46:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 12:46:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 12:46:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 12:46:05 ERROR: BUSCO analysis failed! 2025-12-10 12:46:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-10 12:52:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-10 12:52:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 12:52:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-10 12:52:24 ERROR: BUSCO analysis failed! 2025-12-10 12:52:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73259607/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73259607/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot
1/ocean/projects/mcb140028p/xcgalaxy/main/staging/73259615/tool_script.sh: line 23: 45 Kill
Show full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/73259615/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73263881/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73263881/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
12025-12-11 03:10:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-11 03:10:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-11 03:10:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-11 03:10:40 ERROR: BUSCO analysis failed! 2025-12-11 03:10:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-11 06:18:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-11 06:18:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-11 06:18:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-11 06:18:15 ERROR: BUSCO analysis failed! 2025-12-11 06:18:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-11 09:45:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-11 09:45:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-11 09:45:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-11 09:45:51 ERROR: BUSCO analysis failed! 2025-12-11 09:45:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-11 09:53:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-11 09:53:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz' 2025-12-11 09:53:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz' 2025-12-11 09:53:02 ERROR: BUSCO analysis failed! 2025-12-11 09:53:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-11 10:09:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-11 10:09:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz' 2025-12-11 10:09:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz' 2025-12-11 10:09:07 ERROR: BUSCO analysis failed! 2025-12-11 10:09:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1FATAL: While checking container encryption: could not open image /scratch/xgalaxy/job_4
Show full stderrFATAL: While checking container encryption: could not open image /scratch/xgalaxy/job_45450600/.cvmfsexec/dist/cvmfs/singularity.galaxyproject.org/all/mulled-v2-4eea244974a53a81efc346a4fa9bdfd103e1c9df:e8360df15ed14ce0294477d85f8763fa15108270-0: failed to retrieve path for /scratch/xgalaxy/job_45450600/.cvmfsexec/dist/cvmfs/singularity.galaxyproject.org/all/mulled-v2-4eea244974a53a81efc346a4fa9bdfd103e1c9df:e8360df15ed14ce0294477d85f8763fa15108270-0: lstat /scratch/xgalaxy/job_45450600/.cvmfsexec/dist/cvmfs/singularity.galaxyproject.org/all: no such file or directory
12025-12-12 03:25:25 ERROR: The character "/" is present in the fasta header >gnl|extdb|pg
Show full stderr2025-12-12 03:25:25 ERROR: The character "/" is present in the fasta header >gnl|extdb|pgaptmp_000003_DNA_replication/repair_protein_RecF_[Vibrio_splendidus], which will crash Reader. Please clean the header of your input file. 2025-12-12 03:25:25 ERROR: BUSCO analysis failed! 2025-12-12 03:25:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-12 05:58:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-12 05:58:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-12 05:58:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz' 2025-12-12 05:58:32 ERROR: BUSCO analysis failed! 2025-12-12 05:58:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 02:52:45 ERROR: Please provide a protein file as input
Show full stderr2025-12-13 02:52:45 ERROR: Please provide a protein file as input 2025-12-13 02:52:45 ERROR: BUSCO analysis failed! 2025-12-13 02:52:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 02:59:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 02:59:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/burkholderiales_odb10/refseq_db.faa.gz' 2025-12-13 02:59:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/burkholderiales_odb10/refseq_db.faa.gz' 2025-12-13 02:59:04 ERROR: BUSCO analysis failed! 2025-12-13 02:59:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 08:18:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 08:18:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 08:18:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 08:18:27 ERROR: BUSCO analysis failed! 2025-12-13 08:18:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 04:25:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 04:25:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/burkholderiales_odb10/refseq_db.faa.gz' 2025-12-13 04:25:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/burkholderiales_odb10/refseq_db.faa.gz' 2025-12-13 04:25:17 ERROR: BUSCO analysis failed! 2025-12-13 04:25:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 09:51:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 09:51:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 09:51:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 09:51:54 ERROR: BUSCO analysis failed! 2025-12-13 09:51:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 10:04:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 10:04:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 10:04:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 10:04:06 ERROR: BUSCO analysis failed! 2025-12-13 10:04:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 09:36:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 09:36:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 09:36:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 09:36:48 ERROR: BUSCO analysis failed! 2025-12-13 09:36:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 10:01:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 10:01:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 10:01:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 10:01:42 ERROR: BUSCO analysis failed! 2025-12-13 10:01:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 18:03:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 18:03:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:03:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:03:27 ERROR: BUSCO analysis failed! 2025-12-13 18:03:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 18:05:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 18:05:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:05:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:05:26 ERROR: BUSCO analysis failed! 2025-12-13 18:05:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 17:59:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 17:59:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 17:59:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 17:59:26 ERROR: BUSCO analysis failed! 2025-12-13 17:59:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 18:01:07 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 18:01:07 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:01:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:01:07 ERROR: BUSCO analysis failed! 2025-12-13 18:01:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 10:05:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 10:05:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 10:05:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 10:05:34 ERROR: BUSCO analysis failed! 2025-12-13 10:05:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 10:15:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 10:15:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 10:15:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 10:15:33 ERROR: BUSCO analysis failed! 2025-12-13 10:15:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 10:16:31 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 10:16:31 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 10:16:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 10:16:31 ERROR: BUSCO analysis failed! 2025-12-13 10:16:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 18:16:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 18:16:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:16:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:16:39 ERROR: BUSCO analysis failed! 2025-12-13 18:16:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 18:16:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 18:16:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:16:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:16:56 ERROR: BUSCO analysis failed! 2025-12-13 18:16:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 18:17:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 18:17:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:17:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:17:13 ERROR: BUSCO analysis failed! 2025-12-13 18:17:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 19:07:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 19:07:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 19:07:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 19:07:02 ERROR: BUSCO analysis failed! 2025-12-13 19:07:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 18:53:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 18:53:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:53:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 18:53:33 ERROR: BUSCO analysis failed! 2025-12-13 18:53:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 19:43:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 19:43:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 19:43:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 19:43:48 ERROR: BUSCO analysis failed! 2025-12-13 19:43:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-13 16:42:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-13 16:42:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 16:42:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-13 16:42:08 ERROR: BUSCO analysis failed! 2025-12-13 16:42:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-14 00:41:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-14 00:41:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 00:41:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 00:41:43 ERROR: BUSCO analysis failed! 2025-12-14 00:41:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-14 16:30:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-14 16:30:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 16:30:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 16:30:28 ERROR: BUSCO analysis failed! 2025-12-14 16:30:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/jetstream2/scratch/main/jobs/73343732/tool_script.sh: line 23: 31 Killed
Show full stderr/jetstream2/scratch/main/jobs/73343732/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
12025-12-14 20:20:34 ERROR: Duplicate of sequence >_scaffold_15_000207.1 in input file
Show full stderr2025-12-14 20:20:34 ERROR: Duplicate of sequence >_scaffold_15_000207.1 in input file 2025-12-14 20:20:34 ERROR: BUSCO analysis failed! 2025-12-14 20:20:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-15 04:29:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-15 04:29:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 04:29:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 04:29:09 ERROR: BUSCO analysis failed! 2025-12-15 04:29:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-15 04:29:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-15 04:29:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 04:29:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 04:29:53 ERROR: BUSCO analysis failed! 2025-12-15 04:29:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-14 23:32:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-14 23:32:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 23:32:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-14 23:32:12 ERROR: BUSCO analysis failed! 2025-12-14 23:32:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-15 11:03:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-15 11:03:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 11:03:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 11:03:43 ERROR: BUSCO analysis failed! 2025-12-15 11:03:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-15 14:10:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-15 14:10:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 14:10:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 14:10:45 ERROR: BUSCO analysis failed! 2025-12-15 14:10:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-15 12:03:31 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-15 12:03:31 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 12:03:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 12:03:31 ERROR: BUSCO analysis failed! 2025-12-15 12:03:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/anvil/scratch/x-xcgalaxy/main/staging/73357994/tool_script.sh: line 23: 75 Killed
Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/73357994/tool_script.sh: line 23: 75 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
1/ocean/projects/mcb140028p/xcgalaxy/main/staging/73357995/tool_script.sh: line 23: 45 Kill
Show full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/73357995/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357996/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357996/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357997/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357997/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
1/ocean/projects/mcb140028p/xcgalaxy/main/staging/73357998/tool_script.sh: line 23: 45 Kill
Show full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/73357998/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357999/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357999/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
12025-12-15 23:48:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-15 23:48:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 23:48:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 23:48:32 ERROR: BUSCO analysis failed! 2025-12-15 23:48:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 00:32:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 00:32:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 00:32:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 00:32:48 ERROR: BUSCO analysis failed! 2025-12-16 00:32:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 00:32:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 00:32:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 00:32:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 00:32:47 ERROR: BUSCO analysis failed! 2025-12-16 00:32:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-15 21:28:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-15 21:28:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 21:28:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 21:28:24 ERROR: BUSCO analysis failed! 2025-12-15 21:28:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 00:37:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 00:37:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 00:37:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 00:37:09 ERROR: BUSCO analysis failed! 2025-12-16 00:37:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-15 21:41:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-15 21:41:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 21:41:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-15 21:41:45 ERROR: BUSCO analysis failed! 2025-12-15 21:41:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 00:54:37 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 00:54:37 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 00:54:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 00:54:37 ERROR: BUSCO analysis failed! 2025-12-16 00:54:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 07:03:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 07:03:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 07:03:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 07:03:36 ERROR: BUSCO analysis failed! 2025-12-16 07:03:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 07:03:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 07:03:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 07:03:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 07:03:52 ERROR: BUSCO analysis failed! 2025-12-16 07:03:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 02:34:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 02:34:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 02:34:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 02:34:10 ERROR: BUSCO analysis failed! 2025-12-16 02:34:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 03:18:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 03:18:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 03:18:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 03:18:33 ERROR: BUSCO analysis failed! 2025-12-16 03:18:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 06:45:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 06:45:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 06:45:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 06:45:26 ERROR: BUSCO analysis failed! 2025-12-16 06:45:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 11:44:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 11:44:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 11:44:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 11:44:19 ERROR: BUSCO analysis failed! 2025-12-16 11:44:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 11:44:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 11:44:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 11:44:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 11:44:04 ERROR: BUSCO analysis failed! 2025-12-16 11:44:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 12:29:33 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 12:29:33 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 12:29:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 12:29:33 ERROR: BUSCO analysis failed! 2025-12-16 12:29:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 12:33:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 12:33:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 12:33:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 12:33:24 ERROR: BUSCO analysis failed! 2025-12-16 12:33:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:02:20 ERROR: Metaeuk did not recognize any genes matching the dataset tetra
Show full stderr2025-12-16 15:02:20 ERROR: Metaeuk did not recognize any genes matching the dataset tetrapoda_odb10 in the input file. If this is unexpected, check your input file and your installation of Metaeuk 2025-12-16 15:02:20 ERROR: BUSCO analysis failed! 2025-12-16 15:02:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-17 06:06:24 ERROR: Metaeuk did not recognize any genes matching the dataset tetra
Show full stderr2025-12-17 06:06:24 ERROR: Metaeuk did not recognize any genes matching the dataset tetrapoda_odb10 in the input file. If this is unexpected, check your input file and your installation of Metaeuk 2025-12-17 06:06:24 ERROR: BUSCO analysis failed! 2025-12-17 06:06:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:21:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:21:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:21:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:21:04 ERROR: BUSCO analysis failed! 2025-12-16 16:21:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:31:08 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:31:08 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/alteromonadales_odb10/refseq_db.faa.gz' 2025-12-16 16:31:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/alteromonadales_odb10/refseq_db.faa.gz' 2025-12-16 16:31:08 ERROR: BUSCO analysis failed! 2025-12-16 16:31:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:34:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:34:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/alteromonadales_odb10/refseq_db.faa.gz' 2025-12-16 16:34:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/alteromonadales_odb10/refseq_db.faa.gz' 2025-12-16 16:34:56 ERROR: BUSCO analysis failed! 2025-12-16 16:34:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:55:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:55:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-12-16 16:55:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz' 2025-12-16 16:55:54 ERROR: BUSCO analysis failed! 2025-12-16 16:55:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/jetstream2/scratch/main/jobs/73377275/tool_script.sh: line 23: 31 Killed
Show full stderr/jetstream2/scratch/main/jobs/73377275/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
1/jetstream2/scratch/main/jobs/73378157/tool_script.sh: line 23: 31 Killed
Show full stderr/jetstream2/scratch/main/jobs/73378157/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
1/jetstream2/scratch/main/jobs/73379508/tool_script.sh: line 23: 31 Killed
Show full stderr/jetstream2/scratch/main/jobs/73379508/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
1/anvil/scratch/x-xcgalaxy/main/staging/73381844/tool_script.sh: line 23: 74 Killed
Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/73381844/tool_script.sh: line 23: 74 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'basidiomycota_odb10' --miniprot
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73382933/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73382933/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot
12025-12-16 17:02:38 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:02:38 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:02:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:02:38 ERROR: BUSCO analysis failed! 2025-12-16 17:02:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 14:08:20 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 14:08:20 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:08:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:08:20 ERROR: BUSCO analysis failed! 2025-12-16 14:08:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 14:22:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 14:22:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:22:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:22:21 ERROR: BUSCO analysis failed! 2025-12-16 14:22:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 18:13:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 18:13:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:13:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:13:34 ERROR: BUSCO analysis failed! 2025-12-16 18:13:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:16:13 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:16:13 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:16:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:16:13 ERROR: BUSCO analysis failed! 2025-12-16 15:16:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:24:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:24:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:24:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:24:04 ERROR: BUSCO analysis failed! 2025-12-16 15:24:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:29:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:29:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:29:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:29:04 ERROR: BUSCO analysis failed! 2025-12-16 15:29:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 18:31:35 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 18:31:35 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:31:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:31:35 ERROR: BUSCO analysis failed! 2025-12-16 18:31:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:39:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:39:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:39:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:39:52 ERROR: BUSCO analysis failed! 2025-12-16 15:39:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 18:50:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 18:50:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:50:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:50:55 ERROR: BUSCO analysis failed! 2025-12-16 18:50:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 18:53:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 18:53:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:53:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:53:42 ERROR: BUSCO analysis failed! 2025-12-16 18:53:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:56:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:56:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:56:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:56:21 ERROR: BUSCO analysis failed! 2025-12-16 15:56:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:18:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:18:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:18:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:18:15 ERROR: BUSCO analysis failed! 2025-12-16 16:18:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:20:52 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:20:52 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:20:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:20:52 ERROR: BUSCO analysis failed! 2025-12-16 16:20:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 19:28:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 19:28:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:28:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:28:48 ERROR: BUSCO analysis failed! 2025-12-16 19:28:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:07:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:07:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:07:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:07:28 ERROR: BUSCO analysis failed! 2025-12-16 16:07:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 17:05:12 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:05:12 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:05:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:05:12 ERROR: BUSCO analysis failed! 2025-12-16 17:05:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 17:34:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:34:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:34:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:34:50 ERROR: BUSCO analysis failed! 2025-12-16 17:34:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 17:51:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:51:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:51:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:51:23 ERROR: BUSCO analysis failed! 2025-12-16 17:51:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:03:09 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:03:09 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:03:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:03:09 ERROR: BUSCO analysis failed! 2025-12-16 16:03:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:37:18 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:37:18 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:37:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:37:18 ERROR: BUSCO analysis failed! 2025-12-16 15:37:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 19:49:50 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 19:49:50 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:49:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:49:50 ERROR: BUSCO analysis failed! 2025-12-16 19:49:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 17:45:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:45:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:45:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:45:48 ERROR: BUSCO analysis failed! 2025-12-16 17:45:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 14:53:54 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 14:53:54 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:53:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:53:54 ERROR: BUSCO analysis failed! 2025-12-16 14:53:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:01:51 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:01:51 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:01:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:01:51 ERROR: BUSCO analysis failed! 2025-12-16 15:01:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 18:18:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 18:18:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:18:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:18:48 ERROR: BUSCO analysis failed! 2025-12-16 18:18:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:26:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:26:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:26:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:26:32 ERROR: BUSCO analysis failed! 2025-12-16 15:26:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 14:30:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 14:30:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:30:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:30:27 ERROR: BUSCO analysis failed! 2025-12-16 14:30:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 18:44:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 18:44:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:44:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:44:49 ERROR: BUSCO analysis failed! 2025-12-16 18:44:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:00:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:00:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:00:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:00:28 ERROR: BUSCO analysis failed! 2025-12-16 16:00:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:03:10 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:03:10 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:03:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:03:10 ERROR: BUSCO analysis failed! 2025-12-16 16:03:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:26:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:26:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:26:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:26:06 ERROR: BUSCO analysis failed! 2025-12-16 16:26:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 14:11:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 14:11:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:11:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:11:15 ERROR: BUSCO analysis failed! 2025-12-16 14:11:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 17:16:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:16:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:16:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:16:48 ERROR: BUSCO analysis failed! 2025-12-16 17:16:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 14:19:40 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 14:19:40 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:19:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:19:40 ERROR: BUSCO analysis failed! 2025-12-16 14:19:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 17:25:16 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:25:16 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:25:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:25:16 ERROR: BUSCO analysis failed! 2025-12-16 17:25:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 17:27:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:27:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:27:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:27:48 ERROR: BUSCO analysis failed! 2025-12-16 17:27:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 14:37:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 14:37:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:37:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:37:28 ERROR: BUSCO analysis failed! 2025-12-16 14:37:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 17:40:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:40:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:40:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:40:49 ERROR: BUSCO analysis failed! 2025-12-16 17:40:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 17:43:21 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:43:21 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:43:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:43:21 ERROR: BUSCO analysis failed! 2025-12-16 17:43:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 14:48:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 14:48:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:48:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 14:48:26 ERROR: BUSCO analysis failed! 2025-12-16 14:48:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 17:56:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:56:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:56:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:56:48 ERROR: BUSCO analysis failed! 2025-12-16 17:56:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 17:59:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 17:59:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:59:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 17:59:25 ERROR: BUSCO analysis failed! 2025-12-16 17:59:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 18:07:29 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 18:07:29 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:07:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:07:29 ERROR: BUSCO analysis failed! 2025-12-16 18:07:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:21:24 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:21:24 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:21:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:21:24 ERROR: BUSCO analysis failed! 2025-12-16 15:21:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:42:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:42:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:42:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:42:19 ERROR: BUSCO analysis failed! 2025-12-16 15:42:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:47:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:47:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:47:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:47:36 ERROR: BUSCO analysis failed! 2025-12-16 15:47:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 19:14:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 19:14:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:14:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:14:48 ERROR: BUSCO analysis failed! 2025-12-16 19:14:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:31:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:31:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:31:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:31:36 ERROR: BUSCO analysis failed! 2025-12-16 16:31:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:34:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:34:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:34:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:34:05 ERROR: BUSCO analysis failed! 2025-12-16 16:34:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:36:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:36:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:36:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:36:32 ERROR: BUSCO analysis failed! 2025-12-16 16:36:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 19:57:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 19:57:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:57:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:57:49 ERROR: BUSCO analysis failed! 2025-12-16 19:57:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 20:00:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 20:00:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 20:00:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 20:00:48 ERROR: BUSCO analysis failed! 2025-12-16 20:00:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 19:41:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 19:41:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:41:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:41:49 ERROR: BUSCO analysis failed! 2025-12-16 19:41:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 18:34:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 18:34:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:34:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 18:34:47 ERROR: BUSCO analysis failed! 2025-12-16 18:34:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:06:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:06:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:06:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:06:01 ERROR: BUSCO analysis failed! 2025-12-16 16:06:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 15:04:19 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 15:04:19 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:04:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 15:04:19 ERROR: BUSCO analysis failed! 2025-12-16 15:04:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:23:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:23:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:23:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:23:23 ERROR: BUSCO analysis failed! 2025-12-16 16:23:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:39:02 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:39:02 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:39:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:39:02 ERROR: BUSCO analysis failed! 2025-12-16 16:39:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:44:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:44:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:44:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:44:26 ERROR: BUSCO analysis failed! 2025-12-16 16:44:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:47:01 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:47:01 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:47:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:47:01 ERROR: BUSCO analysis failed! 2025-12-16 16:47:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:52:23 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:52:23 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:52:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:52:23 ERROR: BUSCO analysis failed! 2025-12-16 16:52:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 16:54:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 16:54:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:54:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 16:54:49 ERROR: BUSCO analysis failed! 2025-12-16 16:54:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-16 19:11:47 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-16 19:11:47 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:11:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-16 19:11:47 ERROR: BUSCO analysis failed! 2025-12-16 19:11:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73384400/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73384400/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot
1/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73384496/tool_script.sh: line 23:
Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73384496/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'basidiomycota_odb10' --miniprot
12025-12-17 07:11:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-17 07:11:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 07:11:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 07:11:26 ERROR: BUSCO analysis failed! 2025-12-17 07:11:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-17 07:17:49 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-17 07:17:49 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 07:17:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 07:17:49 ERROR: BUSCO analysis failed! 2025-12-17 07:17:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-17 04:31:34 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-17 04:31:34 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 04:31:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 04:31:34 ERROR: BUSCO analysis failed! 2025-12-17 04:31:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-17 09:03:06 ERROR: The input file does not contain nucleotide sequences.
Show full stderr2025-12-17 09:03:06 ERROR: The input file does not contain nucleotide sequences. 2025-12-17 09:03:06 ERROR: BUSCO analysis failed! 2025-12-17 09:03:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-17 09:09:59 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-17 09:09:59 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 09:09:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 09:09:59 ERROR: BUSCO analysis failed! 2025-12-17 09:09:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-17 09:09:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-17 09:09:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 09:09:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 09:09:17 ERROR: BUSCO analysis failed! 2025-12-17 09:09:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-17 20:41:04 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-17 20:41:04 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 20:41:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 20:41:04 ERROR: BUSCO analysis failed! 2025-12-17 20:41:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-17 21:06:27 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-17 21:06:27 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 21:06:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 21:06:27 ERROR: BUSCO analysis failed! 2025-12-17 21:06:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-17 21:08:15 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-17 21:08:15 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 21:08:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-17 21:08:15 ERROR: BUSCO analysis failed! 2025-12-17 21:08:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-17 21:11:56 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-17 21:11:56 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/rhizobium-agrobacterium_group_odb10/refseq_db.faa.gz' 2025-12-17 21:11:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/rhizobium-agrobacterium_group_odb10/refseq_db.faa.gz' 2025-12-17 21:11:56 ERROR: BUSCO analysis failed! 2025-12-17 21:11:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 09:16:45 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 09:16:45 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 09:16:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 09:16:45 ERROR: BUSCO analysis failed! 2025-12-18 09:16:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 04:22:41 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 04:22:41 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 04:22:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 04:22:41 ERROR: BUSCO analysis failed! 2025-12-18 04:22:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 09:19:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 09:19:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 09:19:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 09:19:22 ERROR: BUSCO analysis failed! 2025-12-18 09:19:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:13:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:13:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-18 12:13:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz' 2025-12-18 12:13:26 ERROR: BUSCO analysis failed! 2025-12-18 12:13:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:46:55 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:46:55 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 12:46:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 12:46:55 ERROR: BUSCO analysis failed! 2025-12-18 12:46:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:47:17 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:47:17 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 12:47:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 12:47:17 ERROR: BUSCO analysis failed! 2025-12-18 12:47:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:47:32 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:47:32 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 12:47:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 12:47:32 ERROR: BUSCO analysis failed! 2025-12-18 12:47:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 07:50:39 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 07:50:39 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 07:50:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 07:50:39 ERROR: BUSCO analysis failed! 2025-12-18 07:50:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:47:48 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:47:48 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 12:47:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 12:47:48 ERROR: BUSCO analysis failed! 2025-12-18 12:47:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:49:26 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:49:26 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 12:49:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 12:49:26 ERROR: BUSCO analysis failed! 2025-12-18 12:49:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:53:25 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:53:25 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:53:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:53:25 ERROR: BUSCO analysis failed! 2025-12-18 12:53:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:53:42 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:53:42 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:53:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:53:42 ERROR: BUSCO analysis failed! 2025-12-18 12:53:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:54:05 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:54:05 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:54:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:54:05 ERROR: BUSCO analysis failed! 2025-12-18 12:54:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:54:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:54:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:54:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:54:22 ERROR: BUSCO analysis failed! 2025-12-18 12:54:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:55:53 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:55:53 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:55:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:55:53 ERROR: BUSCO analysis failed! 2025-12-18 12:55:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 12:56:11 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 12:56:11 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:56:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz' 2025-12-18 12:56:11 ERROR: BUSCO analysis failed! 2025-12-18 12:56:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 13:00:28 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 13:00:28 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run self.runner.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-18 13:00:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz' 2025-12-18 13:00:28 ERROR: BUSCO analysis failed! 2025-12-18 13:00:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 13:08:06 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 13:08:06 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 13:08:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 13:08:06 ERROR: BUSCO analysis failed! 2025-12-18 13:08:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 13:40:43 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 13:40:43 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 13:40:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 13:40:43 ERROR: BUSCO analysis failed! 2025-12-18 13:40:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 08:55:36 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 08:55:36 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 08:55:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 08:55:36 ERROR: BUSCO analysis failed! 2025-12-18 08:55:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 14:56:30 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 14:56:30 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 14:56:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 14:56:30 ERROR: BUSCO analysis failed! 2025-12-18 14:56:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 15:05:22 CRITICAL: Unhandled exception occurred:
Show full stderr2025-12-18 15:05:22 CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run self.get_lineage() File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage ) = self.auto_select_lineage() # full path File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage asl.run_auto_selector() File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector root_runners = self.run_lineages_list(self.all_lineages) File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list busco_run.run_analysis(callback=self.callback) File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis self.run_miniprot(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot self.miniprot_align_runner.configure_runner(incomplete_buscos) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner self.refseq_db = self.decompress_refseq_file(gzip_refseq) File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file with gzip.open(gzip_file, "rb") as compressed_file: File "/usr/local/lib/python3.10/gzip.py", line 58, in open binary_file = GzipFile(filename, gz_mode, compresslevel) File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__ fileobj = self.myfileobj = builtins.open(filename, mode or 'rb') FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 15:05:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz' 2025-12-18 15:05:22 ERROR: BUSCO analysis failed! 2025-12-18 15:05:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 10:18:36 ERROR: Retraining did not complete correctly. Check your Augustus conf
Show full stderr2025-12-18 10:18:36 ERROR: Retraining did not complete correctly. Check your Augustus config path environment variable. 2025-12-18 10:18:36 ERROR: BUSCO analysis failed! 2025-12-18 10:18:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 10:28:08 ERROR: No genes were recognized by BUSCO. Please check the content o
Show full stderr2025-12-18 10:28:08 ERROR: No genes were recognized by BUSCO. Please check the content of your input file. 2025-12-18 10:28:08 ERROR: BUSCO analysis failed! 2025-12-18 10:28:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues
12025-12-18 20:13:34 ERROR: Retraining did not complete correctly. Check your Augustus conf
Show full stderr2025-12-18 20:13:34 ERROR: Retraining did not complete correctly. Check your Augustus config path environment variable. 2025-12-18 20:13:34 ERROR: BUSCO analysis failed! 2025-12-18 20:13:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues