| Count | Error Message |
| 52 | cp: cannot stat 'busco_galaxy/run_/full_table.tsv': No such file or directory |
| 5 | /usr/local/lib/python3.10/site-packages/Bio/SeqIO/FastaIO.py:203: BiopythonDeprecationWarning: PreShow full stderr/usr/local/lib/python3.10/site-packages/Bio/SeqIO/FastaIO.py:203: BiopythonDeprecationWarning: Previously, the FASTA parser silently ignored comments at the beginning of the FASTA file (before the first sequence).
Nowadays, the FASTA file format is usually understood not to have any such comments, and most software packages do not allow them. Therefore, the use of comments at the beginning of a FASTA file is now deprecated in Biopython.
In a future Biopython release, this deprecation warning will be replaced by a ValueError. To avoid this, there are three options:
(1) Modify your FASTA file to remove such comments at the beginning of the file.
(2) Use SeqIO.parse with the 'fasta-pearson' format instead of 'fasta'. This format is consistent with the FASTA format defined by William Pearson's FASTA aligner software. Thie format allows for comments before the first sequence; lines starting with the ';' character anywhere in the file are also regarded as comment lines and are ignored.
(3) Use the 'fasta-blast' format. This format regards any lines starting with '!', '#', or ';' as comment lines. The 'fasta-blast' format may be safer than the 'fasta-pearson' format, as it explicitly indicates which lines are comments.
warnings.warn(
2025-11-17 05:42:17 ERROR: The input file does not contain nucleotide sequences.
2025-11-17 05:42:17 ERROR: BUSCO analysis failed!
2025-11-17 05:42:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 4 | ERROR: Input file is empty.Show full stderrERROR: Input file is empty.
ERROR: BUSCO analysis failed !
ERROR: Check the logs, read the user guide, and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 3 | 2025-11-13 01:35:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 01:35:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz'
2025-11-13 01:35:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz'
2025-11-13 01:35:33 ERROR: BUSCO analysis failed!
2025-11-13 01:35:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 3 | 2025-12-18 09:16:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 09:16:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 09:16:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 09:16:44 ERROR: BUSCO analysis failed!
2025-12-18 09:16:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-03 04:48:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-03 04:48:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 04:48:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 04:48:10 ERROR: BUSCO analysis failed!
2025-11-03 04:48:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-06 12:10:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 12:10:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:10:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:10:47 ERROR: BUSCO analysis failed!
2025-11-06 12:10:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-14 03:27:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:27:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:27:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:27:38 ERROR: BUSCO analysis failed!
2025-11-14 03:27:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-14 04:23:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:23:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:23:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:23:43 ERROR: BUSCO analysis failed!
2025-11-14 04:23:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-14 04:03:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:03:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:03:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:03:10 ERROR: BUSCO analysis failed!
2025-11-14 04:03:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-14 04:58:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:58:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:58:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:58:09 ERROR: BUSCO analysis failed!
2025-11-14 04:58:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-14 22:32:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:32:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:32:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:32:10 ERROR: BUSCO analysis failed!
2025-11-14 22:32:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-14 22:29:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:29:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:29:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:29:18 ERROR: BUSCO analysis failed!
2025-11-14 22:29:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-14 17:29:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 17:29:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:29:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:29:41 ERROR: BUSCO analysis failed!
2025-11-14 17:29:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-17 03:05:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 03:05:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:05:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:05:40 ERROR: BUSCO analysis failed!
2025-11-17 03:05:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-17 03:19:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 03:19:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:19:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:19:49 ERROR: BUSCO analysis failed!
2025-11-17 03:19:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-18 08:58:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 08:58:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:58:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:58:13 ERROR: BUSCO analysis failed!
2025-11-18 08:58:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-18 11:40:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:40:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:40:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:40:46 ERROR: BUSCO analysis failed!
2025-11-18 11:40:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-18 09:46:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:46:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:46:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:46:40 ERROR: BUSCO analysis failed!
2025-11-18 09:46:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-18 10:49:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:49:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:49:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:49:47 ERROR: BUSCO analysis failed!
2025-11-18 10:49:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-18 09:50:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:50:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:50:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:50:42 ERROR: BUSCO analysis failed!
2025-11-18 09:50:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-18 14:43:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:43:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:43:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:43:42 ERROR: BUSCO analysis failed!
2025-11-18 14:43:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-20 11:30:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 11:30:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 11:30:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 11:30:51 ERROR: BUSCO analysis failed!
2025-11-20 11:30:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-22 22:57:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 22:57:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 22:57:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 22:57:02 ERROR: BUSCO analysis failed!
2025-11-22 22:57:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-23 07:39:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:39:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:39:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:39:32 ERROR: BUSCO analysis failed!
2025-11-23 07:39:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-23 02:57:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:57:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:57:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:57:33 ERROR: BUSCO analysis failed!
2025-11-23 02:57:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-23 02:52:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:52:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:52:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:52:21 ERROR: BUSCO analysis failed!
2025-11-23 02:52:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-23 08:28:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:28:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:28:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:28:17 ERROR: BUSCO analysis failed!
2025-11-23 08:28:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-24 02:27:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:27:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:27:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:27:46 ERROR: BUSCO analysis failed!
2025-11-24 02:27:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-24 09:39:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 09:39:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:39:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:39:54 ERROR: BUSCO analysis failed!
2025-11-24 09:39:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-24 12:40:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 12:40:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 12:40:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 12:40:52 ERROR: BUSCO analysis failed!
2025-11-24 12:40:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-24 09:52:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 09:52:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:52:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:52:54 ERROR: BUSCO analysis failed!
2025-11-24 09:52:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-24 10:31:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:31:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:31:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:31:38 ERROR: BUSCO analysis failed!
2025-11-24 10:31:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-11-24 10:12:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:12:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:12:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:12:22 ERROR: BUSCO analysis failed!
2025-11-24 10:12:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | ERROR: Prodigal did not recognize any genes matching the dataset enterobacterales_odb10 inShow full stderrERROR: Prodigal did not recognize any genes matching the dataset enterobacterales_odb10 in the input file. If this is unexpected, check your input file and your installation of Prodigal
ERROR: BUSCO analysis failed !
ERROR: Check the logs, read the user guide, and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-12-01 17:07:48 ERROR: Please provide a protein file as inputShow full stderr2025-12-01 17:07:48 ERROR: Please provide a protein file as input
2025-12-01 17:07:48 ERROR: BUSCO analysis failed!
2025-12-01 17:07:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-12-04 05:53:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 05:53:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 05:53:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 05:53:28 ERROR: BUSCO analysis failed!
2025-12-04 05:53:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-12-07 00:11:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-07 00:11:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 00:11:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 00:11:33 ERROR: BUSCO analysis failed!
2025-12-07 00:11:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-12-09 10:45:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 10:45:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 10:45:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 10:45:00 ERROR: BUSCO analysis failed!
2025-12-09 10:45:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-12-09 10:44:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 10:44:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 10:44:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 10:44:59 ERROR: BUSCO analysis failed!
2025-12-09 10:44:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-12-14 00:41:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-14 00:41:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 00:41:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 00:41:39 ERROR: BUSCO analysis failed!
2025-12-14 00:41:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-12-14 16:27:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-14 16:27:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 16:27:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 16:27:59 ERROR: BUSCO analysis failed!
2025-12-14 16:27:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-12-14 16:30:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-14 16:30:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 16:30:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 16:30:15 ERROR: BUSCO analysis failed!
2025-12-14 16:30:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 2 | 2025-12-18 04:17:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 04:17:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 04:17:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 04:17:25 ERROR: BUSCO analysis failed!
2025-12-18 04:17:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-01 12:27:13 ERROR: Unable to find single copy BUSCO gene in Augustus output.Show full stderr2025-11-01 12:27:13 ERROR: Unable to find single copy BUSCO gene in Augustus output.
2025-11-01 12:27:13 ERROR: BUSCO analysis failed!
2025-11-01 12:27:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-01 16:45:48 ERROR: Unable to find single copy BUSCO gene in Augustus output.Show full stderr2025-11-01 16:45:48 ERROR: Unable to find single copy BUSCO gene in Augustus output.
2025-11-01 16:45:48 ERROR: BUSCO analysis failed!
2025-11-01 16:45:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-01 12:57:47 ERROR: Unable to find single copy BUSCO gene in Augustus output.Show full stderr2025-11-01 12:57:47 ERROR: Unable to find single copy BUSCO gene in Augustus output.
2025-11-01 12:57:47 ERROR: BUSCO analysis failed!
2025-11-01 12:57:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-01 17:24:41 ERROR: Unable to find single copy BUSCO gene in Augustus output.Show full stderr2025-11-01 17:24:41 ERROR: Unable to find single copy BUSCO gene in Augustus output.
2025-11-01 17:24:41 ERROR: BUSCO analysis failed!
2025-11-01 17:24:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-01 21:23:36 ERROR: Unable to find single copy BUSCO gene in Augustus output.Show full stderr2025-11-01 21:23:36 ERROR: Unable to find single copy BUSCO gene in Augustus output.
2025-11-01 21:23:36 ERROR: BUSCO analysis failed!
2025-11-01 21:23:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-01 21:55:52 ERROR: Unable to find single copy BUSCO gene in Augustus output.Show full stderr2025-11-01 21:55:52 ERROR: Unable to find single copy BUSCO gene in Augustus output.
2025-11-01 21:55:52 ERROR: BUSCO analysis failed!
2025-11-01 21:55:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 00:31:44 ERROR: Please provide a protein file as inputShow full stderr2025-11-03 00:31:44 ERROR: Please provide a protein file as input
2025-11-03 00:31:44 ERROR: BUSCO analysis failed!
2025-11-03 00:31:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 01:12:29 ERROR: Please provide a protein file as inputShow full stderr2025-11-03 01:12:29 ERROR: Please provide a protein file as input
2025-11-03 01:12:29 ERROR: BUSCO analysis failed!
2025-11-03 01:12:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /anvil/scratch/x-xcgalaxy/main/staging/72141191/tool_script.sh: line 23: 48 Killed Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72141191/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'liliopsida_odb10' --miniprot |
| 1 | 2025-11-02 19:55:02 ERROR: Unable to find single copy BUSCO gene in Augustus output.Show full stderr2025-11-02 19:55:02 ERROR: Unable to find single copy BUSCO gene in Augustus output.
2025-11-02 19:55:02 ERROR: BUSCO analysis failed!
2025-11-02 19:55:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 03:23:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-03 03:23:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 03:23:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 03:23:42 ERROR: BUSCO analysis failed!
2025-11-03 03:23:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-02 20:39:14 ERROR: The character "/" is present in the fasta header >ERR638230.1/Show full stderr2025-11-02 20:39:14 ERROR: The character "/" is present in the fasta header >ERR638230.1/1, which will crash Reader. Please clean the header of your input file.
2025-11-02 20:39:14 ERROR: BUSCO analysis failed!
2025-11-02 20:39:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-02 20:39:14 ERROR: The character "/" is present in the fasta header >ERR638228.3/Show full stderr2025-11-02 20:39:14 ERROR: The character "/" is present in the fasta header >ERR638228.3/1, which will crash Reader. Please clean the header of your input file.
2025-11-02 20:39:14 ERROR: BUSCO analysis failed!
2025-11-02 20:39:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-02 23:40:06 ERROR: The character "/" is present in the fasta header >ERR638227.1/Show full stderr2025-11-02 23:40:06 ERROR: The character "/" is present in the fasta header >ERR638227.1/1, which will crash Reader. Please clean the header of your input file.
2025-11-02 23:40:06 ERROR: BUSCO analysis failed!
2025-11-02 23:40:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 04:38:47 ERROR: The character "/" is present in the fasta header >ERR638225.1/Show full stderr2025-11-03 04:38:47 ERROR: The character "/" is present in the fasta header >ERR638225.1/1, which will crash Reader. Please clean the header of your input file.
2025-11-03 04:38:47 ERROR: BUSCO analysis failed!
2025-11-03 04:38:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 04:38:50 ERROR: The character "/" is present in the fasta header >ERR638229.1/Show full stderr2025-11-03 04:38:50 ERROR: The character "/" is present in the fasta header >ERR638229.1/1, which will crash Reader. Please clean the header of your input file.
2025-11-03 04:38:50 ERROR: BUSCO analysis failed!
2025-11-03 04:38:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 04:38:47 ERROR: The character "/" is present in the fasta header >ERR638226.3/Show full stderr2025-11-03 04:38:47 ERROR: The character "/" is present in the fasta header >ERR638226.3/1, which will crash Reader. Please clean the header of your input file.
2025-11-03 04:38:47 ERROR: BUSCO analysis failed!
2025-11-03 04:38:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 04:46:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-03 04:46:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 04:46:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 04:46:14 ERROR: BUSCO analysis failed!
2025-11-03 04:46:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 01:42:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-03 01:42:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 01:42:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 01:42:24 ERROR: BUSCO analysis failed!
2025-11-03 01:42:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 04:44:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-03 04:44:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 04:44:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 04:44:09 ERROR: BUSCO analysis failed!
2025-11-03 04:44:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 04:46:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-03 04:46:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 04:46:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 04:46:13 ERROR: BUSCO analysis failed!
2025-11-03 04:46:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 04:48:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-03 04:48:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 04:48:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 04:48:17 ERROR: BUSCO analysis failed!
2025-11-03 04:48:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /ocean/projects/mcb140028p/xcgalaxy/main/staging/72163715/tool_script.sh: line 23: 45 KillShow full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72163715/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'liliopsida_odb10' --miniprot |
| 1 | /ocean/projects/mcb140028p/xcgalaxy/main/staging/72170966/tool_script.sh: line 23: 45 KillShow full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72170966/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'endopterygota_odb10' --miniprot |
| 1 | /ocean/projects/mcb140028p/xcgalaxy/main/staging/72170969/tool_script.sh: line 23: 45 KillShow full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72170969/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'endopterygota_odb10' --miniprot |
| 1 | 2025-11-03 22:26:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-03 22:26:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 22:26:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 22:26:26 ERROR: BUSCO analysis failed!
2025-11-03 22:26:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-04 01:30:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-04 01:30:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-04 01:30:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-04 01:30:07 ERROR: BUSCO analysis failed!
2025-11-04 01:30:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-03 23:05:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-03 23:05:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 23:05:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-03 23:05:48 ERROR: BUSCO analysis failed!
2025-11-03 23:05:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-04 02:11:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-04 02:11:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-04 02:11:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-04 02:11:57 ERROR: BUSCO analysis failed!
2025-11-04 02:11:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /anvil/scratch/x-xcgalaxy/main/staging/72189967/tool_script.sh: line 23: 48 Killed Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72189967/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72190438/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72190438/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | 2025-11-04 04:09:11 ERROR: The character "/" is present in the fasta header >F01_cb10137_Show full stderr2025-11-04 04:09:11 ERROR: The character "/" is present in the fasta header >F01_cb10137_c132110/f1p0/2560, which will crash Reader. Please clean the header of your input file.
2025-11-04 04:09:11 ERROR: BUSCO analysis failed!
2025-11-04 04:09:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-04 04:11:48 ERROR: The character "/" is present in the fasta header >F01_cb10044_Show full stderr2025-11-04 04:11:48 ERROR: The character "/" is present in the fasta header >F01_cb10044_c11/f1p0/7240, which will crash Reader. Please clean the header of your input file.
2025-11-04 04:11:48 ERROR: BUSCO analysis failed!
2025-11-04 04:11:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-04 04:15:45 ERROR: The character "/" is present in the fasta header >F01_cb10137_Show full stderr2025-11-04 04:15:45 ERROR: The character "/" is present in the fasta header >F01_cb10137_c132110/f1p0/2560, which will crash Reader. Please clean the header of your input file.
2025-11-04 04:15:45 ERROR: BUSCO analysis failed!
2025-11-04 04:15:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /anvil/scratch/x-xcgalaxy/main/staging/72195986/tool_script.sh: line 23: 48 Killed Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72195986/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot |
| 1 | 2025-11-04 09:01:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-04 09:01:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-04 09:01:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-04 09:01:23 ERROR: BUSCO analysis failed!
2025-11-04 09:01:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-04 11:08:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-04 11:08:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-04 11:08:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-04 11:08:01 ERROR: BUSCO analysis failed!
2025-11-04 11:08:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-04 12:45:40 ERROR: No genes were recognized by BUSCO. Please check the content oShow full stderr2025-11-04 12:45:40 ERROR: No genes were recognized by BUSCO. Please check the content of your input file.
2025-11-04 12:45:40 ERROR: BUSCO analysis failed!
2025-11-04 12:45:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-04 13:45:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-04 13:45:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-04 13:45:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-04 13:45:54 ERROR: BUSCO analysis failed!
2025-11-04 13:45:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-04 10:52:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-04 10:52:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-04 10:52:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-04 10:52:18 ERROR: BUSCO analysis failed!
2025-11-04 10:52:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 08:04:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-05 08:04:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-05 08:04:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-05 08:04:18 ERROR: BUSCO analysis failed!
2025-11-05 08:04:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 08:26:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-05 08:26:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-05 08:26:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-05 08:26:47 ERROR: BUSCO analysis failed!
2025-11-05 08:26:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 03:46:41 ERROR: The character "/" is present in the fasta header >F01_cb10044_Show full stderr2025-11-05 03:46:41 ERROR: The character "/" is present in the fasta header >F01_cb10044_c11/f1p0/7240, which will crash Reader. Please clean the header of your input file.
2025-11-05 03:46:41 ERROR: BUSCO analysis failed!
2025-11-05 03:46:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /anvil/scratch/x-xcgalaxy/main/staging/72216397/tool_script.sh: line 23: 48 Killed Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72216397/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'ascomycota_odb10' --miniprot |
| 1 | 2025-11-05 11:32:58 ERROR: Please provide a protein file as inputShow full stderr2025-11-05 11:32:58 ERROR: Please provide a protein file as input
2025-11-05 11:32:58 ERROR: BUSCO analysis failed!
2025-11-05 11:32:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 11:22:52 ERROR: Please provide a protein file as inputShow full stderr2025-11-05 11:22:52 ERROR: Please provide a protein file as input
2025-11-05 11:22:52 ERROR: BUSCO analysis failed!
2025-11-05 11:22:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 11:37:52 ERROR: Please provide a protein file as inputShow full stderr2025-11-05 11:37:52 ERROR: Please provide a protein file as input
2025-11-05 11:37:52 ERROR: BUSCO analysis failed!
2025-11-05 11:37:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 12:17:53 ERROR: Please provide a protein file as inputShow full stderr2025-11-05 12:17:53 ERROR: Please provide a protein file as input
2025-11-05 12:17:53 ERROR: BUSCO analysis failed!
2025-11-05 12:17:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 20:09:45 ERROR: Please provide a protein file as inputShow full stderr2025-11-05 20:09:45 ERROR: Please provide a protein file as input
2025-11-05 20:09:45 ERROR: BUSCO analysis failed!
2025-11-05 20:09:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 21:21:42 ERROR: Please provide a protein file as inputShow full stderr2025-11-05 21:21:42 ERROR: Please provide a protein file as input
2025-11-05 21:21:42 ERROR: BUSCO analysis failed!
2025-11-05 21:21:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 20:56:15 ERROR: Please provide a protein file as inputShow full stderr2025-11-05 20:56:15 ERROR: Please provide a protein file as input
2025-11-05 20:56:15 ERROR: BUSCO analysis failed!
2025-11-05 20:56:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 21:37:12 ERROR: Please provide a protein file as inputShow full stderr2025-11-05 21:37:12 ERROR: Please provide a protein file as input
2025-11-05 21:37:12 ERROR: BUSCO analysis failed!
2025-11-05 21:37:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /ocean/projects/mcb140028p/xcgalaxy/main/staging/72228320/tool_script.sh: line 23: 45 KillShow full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72228320/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'ascomycota_odb10' --miniprot |
| 1 | 2025-11-05 09:08:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-05 09:08:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-05 09:08:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-05 09:08:55 ERROR: BUSCO analysis failed!
2025-11-05 09:08:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 14:16:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-05 14:16:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-05 14:16:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-05 14:16:36 ERROR: BUSCO analysis failed!
2025-11-05 14:16:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 09:24:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-05 09:24:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteroidia_odb10/refseq_db.faa.gz'
2025-11-05 09:24:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteroidia_odb10/refseq_db.faa.gz'
2025-11-05 09:24:12 ERROR: BUSCO analysis failed!
2025-11-05 09:24:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 05:58:30 ERROR: Please provide a protein file as inputShow full stderr2025-11-06 05:58:30 ERROR: Please provide a protein file as input
2025-11-06 05:58:30 ERROR: BUSCO analysis failed!
2025-11-06 05:58:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 05:58:59 ERROR: Please provide a protein file as inputShow full stderr2025-11-06 05:58:59 ERROR: Please provide a protein file as input
2025-11-06 05:58:59 ERROR: BUSCO analysis failed!
2025-11-06 05:58:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 06:00:32 ERROR: Please provide a protein file as inputShow full stderr2025-11-06 06:00:32 ERROR: Please provide a protein file as input
2025-11-06 06:00:32 ERROR: BUSCO analysis failed!
2025-11-06 06:00:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 06:40:45 ERROR: Please provide a protein file as inputShow full stderr2025-11-06 06:40:45 ERROR: Please provide a protein file as input
2025-11-06 06:40:45 ERROR: BUSCO analysis failed!
2025-11-06 06:40:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 06:29:45 ERROR: Please provide a protein file as inputShow full stderr2025-11-06 06:29:45 ERROR: Please provide a protein file as input
2025-11-06 06:29:45 ERROR: BUSCO analysis failed!
2025-11-06 06:29:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 06:29:46 ERROR: Please provide a protein file as inputShow full stderr2025-11-06 06:29:46 ERROR: Please provide a protein file as input
2025-11-06 06:29:46 ERROR: BUSCO analysis failed!
2025-11-06 06:29:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-05 19:44:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-05 19:44:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz'
2025-11-05 19:44:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz'
2025-11-05 19:44:00 ERROR: BUSCO analysis failed!
2025-11-05 19:44:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 09:22:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 09:22:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-06 09:22:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-06 09:22:22 ERROR: BUSCO analysis failed!
2025-11-06 09:22:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 04:29:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 04:29:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-06 04:29:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-06 04:29:47 ERROR: BUSCO analysis failed!
2025-11-06 04:29:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 01:29:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 01:29:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 01:29:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 01:29:43 ERROR: BUSCO analysis failed!
2025-11-06 01:29:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 09:37:43 ERROR: Please provide a protein file as inputShow full stderr2025-11-06 09:37:43 ERROR: Please provide a protein file as input
2025-11-06 09:37:43 ERROR: BUSCO analysis failed!
2025-11-06 09:37:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 09:43:31 ERROR: Please provide a protein file as inputShow full stderr2025-11-06 09:43:31 ERROR: Please provide a protein file as input
2025-11-06 09:43:31 ERROR: BUSCO analysis failed!
2025-11-06 09:43:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 06:24:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 06:24:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 06:24:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 06:24:58 ERROR: BUSCO analysis failed!
2025-11-06 06:24:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 06:24:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 06:24:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-06 06:24:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-06 06:24:57 ERROR: BUSCO analysis failed!
2025-11-06 06:24:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 06:31:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 06:31:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 06:31:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 06:31:04 ERROR: BUSCO analysis failed!
2025-11-06 06:31:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 03:38:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 03:38:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-06 03:38:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-06 03:38:33 ERROR: BUSCO analysis failed!
2025-11-06 03:38:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 12:11:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 12:11:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:11:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:11:54 ERROR: BUSCO analysis failed!
2025-11-06 12:11:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 12:18:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 12:18:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:18:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:18:23 ERROR: BUSCO analysis failed!
2025-11-06 12:18:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 07:54:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 07:54:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 07:54:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 07:54:08 ERROR: BUSCO analysis failed!
2025-11-06 07:54:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 08:00:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 08:00:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 08:00:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 08:00:14 ERROR: BUSCO analysis failed!
2025-11-06 08:00:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 16:08:31 ERROR: Please provide a protein file as inputShow full stderr2025-11-06 16:08:31 ERROR: Please provide a protein file as input
2025-11-06 16:08:31 ERROR: BUSCO analysis failed!
2025-11-06 16:08:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 16:15:29 ERROR: Please provide a protein file as inputShow full stderr2025-11-06 16:15:29 ERROR: Please provide a protein file as input
2025-11-06 16:15:29 ERROR: BUSCO analysis failed!
2025-11-06 16:15:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 12:15:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 12:15:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:15:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:15:07 ERROR: BUSCO analysis failed!
2025-11-06 12:15:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 09:09:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 09:09:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 09:09:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 09:09:29 ERROR: BUSCO analysis failed!
2025-11-06 09:09:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 12:15:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 12:15:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:15:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:15:05 ERROR: BUSCO analysis failed!
2025-11-06 12:15:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 12:24:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 12:24:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:24:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:24:45 ERROR: BUSCO analysis failed!
2025-11-06 12:24:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 12:24:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 12:24:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:24:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 12:24:46 ERROR: BUSCO analysis failed!
2025-11-06 12:24:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 13:06:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 13:06:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.9/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.9/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.9/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.9/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.9/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.9/site-packages/busco/BuscoRunner.py", line 564, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.9/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.9/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.9/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.9/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.9/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.9/gzip.py", line 173, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 13:06:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 13:06:09 ERROR: BUSCO analysis failed!
2025-11-06 13:06:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 10:58:30 ERROR: Retraining did not complete correctly. Check your Augustus confShow full stderr2025-11-06 10:58:30 ERROR: Retraining did not complete correctly. Check your Augustus config path environment variable.
2025-11-06 10:58:30 ERROR: BUSCO analysis failed!
2025-11-06 10:58:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-06 15:47:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-06 15:47:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 15:47:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-06 15:47:18 ERROR: BUSCO analysis failed!
2025-11-06 15:47:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-07 05:00:18 ERROR: Please provide a protein file as inputShow full stderr2025-11-07 05:00:18 ERROR: Please provide a protein file as input
2025-11-07 05:00:18 ERROR: BUSCO analysis failed!
2025-11-07 05:00:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-07 05:39:18 ERROR: Please provide a protein file as inputShow full stderr2025-11-07 05:39:18 ERROR: Please provide a protein file as input
2025-11-07 05:39:18 ERROR: BUSCO analysis failed!
2025-11-07 05:39:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-07 03:47:51 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-11-07 03:47:51 ERROR: The input file does not contain nucleotide sequences.
2025-11-07 03:47:51 ERROR: BUSCO analysis failed!
2025-11-07 03:47:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /anvil/scratch/x-xcgalaxy/main/staging/72298326/tool_script.sh: line 23: 48 Killed Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72298326/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'endopterygota_odb10' --miniprot |
| 1 | 2025-11-07 08:18:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-07 08:18:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-07 08:18:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-07 08:18:51 ERROR: BUSCO analysis failed!
2025-11-07 08:18:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-07 07:29:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-07 07:29:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-07 07:29:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-07 07:29:17 ERROR: BUSCO analysis failed!
2025-11-07 07:29:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72313475/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72313475/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot |
| 1 | 2025-11-07 15:39:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-07 15:39:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-07 15:39:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-07 15:39:11 ERROR: BUSCO analysis failed!
2025-11-07 15:39:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-07 23:36:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-07 23:36:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-07 23:36:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-07 23:36:20 ERROR: BUSCO analysis failed!
2025-11-07 23:36:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-08 06:43:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-08 06:43:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-08 06:43:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-08 06:43:11 ERROR: BUSCO analysis failed!
2025-11-08 06:43:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-08 10:23:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-08 10:23:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-08 10:23:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-08 10:23:30 ERROR: BUSCO analysis failed!
2025-11-08 10:23:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72354339/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72354339/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot |
| 1 | 2025-11-09 23:27:19 ERROR: Please provide a protein file as inputShow full stderr2025-11-09 23:27:19 ERROR: Please provide a protein file as input
2025-11-09 23:27:19 ERROR: BUSCO analysis failed!
2025-11-09 23:27:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-09 23:50:41 ERROR: Please provide a protein file as inputShow full stderr2025-11-09 23:50:41 ERROR: Please provide a protein file as input
2025-11-09 23:50:41 ERROR: BUSCO analysis failed!
2025-11-09 23:50:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-09 21:01:32 ERROR: The character "/" is present in the fasta header >LH00221:477:Show full stderr2025-11-09 21:01:32 ERROR: The character "/" is present in the fasta header >LH00221:477:237NWYLT4:3:1101:1000:7698/1, which will crash Reader. Please clean the header of your input file.
2025-11-09 21:01:32 ERROR: BUSCO analysis failed!
2025-11-09 21:01:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-09 20:58:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-09 20:58:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-09 20:58:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-09 20:58:57 ERROR: BUSCO analysis failed!
2025-11-09 20:58:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 02:16:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 02:16:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 02:16:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 02:16:03 ERROR: BUSCO analysis failed!
2025-11-10 02:16:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 10:17:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 10:17:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 10:17:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 10:17:50 ERROR: BUSCO analysis failed!
2025-11-10 10:17:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 05:17:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 05:17:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 05:17:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 05:17:21 ERROR: BUSCO analysis failed!
2025-11-10 05:17:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 06:11:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 06:11:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 06:11:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 06:11:36 ERROR: BUSCO analysis failed!
2025-11-10 06:11:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 03:11:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 03:11:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 03:11:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 03:11:36 ERROR: BUSCO analysis failed!
2025-11-10 03:11:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 11:18:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 11:18:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 11:18:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 11:18:57 ERROR: BUSCO analysis failed!
2025-11-10 11:18:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 07:10:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 07:10:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 07:10:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 07:10:54 ERROR: BUSCO analysis failed!
2025-11-10 07:10:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 12:21:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 12:21:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 12:21:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 12:21:27 ERROR: BUSCO analysis failed!
2025-11-10 12:21:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 13:31:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 13:31:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 13:31:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 13:31:30 ERROR: BUSCO analysis failed!
2025-11-10 13:31:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 05:42:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 05:42:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 05:42:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-10 05:42:30 ERROR: BUSCO analysis failed!
2025-11-10 05:42:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 13:49:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 13:49:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 13:49:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 13:49:02 ERROR: BUSCO analysis failed!
2025-11-10 13:49:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 13:53:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 13:53:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-10 13:53:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-10 13:53:28 ERROR: BUSCO analysis failed!
2025-11-10 13:53:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 14:08:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 14:08:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 14:08:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 14:08:34 ERROR: BUSCO analysis failed!
2025-11-10 14:08:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 17:33:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 17:33:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 17:33:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 17:33:27 ERROR: BUSCO analysis failed!
2025-11-10 17:33:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 17:49:31 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 17:49:31 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 17:49:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 17:49:31 ERROR: BUSCO analysis failed!
2025-11-10 17:49:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 18:25:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 18:25:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 18:25:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 18:25:10 ERROR: BUSCO analysis failed!
2025-11-10 18:25:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 21:38:51 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-11-10 21:38:51 ERROR: The input file does not contain nucleotide sequences.
2025-11-10 21:38:51 ERROR: BUSCO analysis failed!
2025-11-10 21:38:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-10 18:52:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-10 18:52:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 18:52:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-10 18:52:07 ERROR: BUSCO analysis failed!
2025-11-10 18:52:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-11 01:30:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-11 01:30:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 01:30:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 01:30:07 ERROR: BUSCO analysis failed!
2025-11-11 01:30:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /jetstream2/scratch/main/jobs-vgp/72406474/tool_script.sh: line 23: 77 Killed Show full stderr/jetstream2/scratch/main/jobs-vgp/72406474/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot |
| 1 | /jetstream2/scratch/main/jobs-vgp/72406822/tool_script.sh: line 23: 77 Killed Show full stderr/jetstream2/scratch/main/jobs-vgp/72406822/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot |
| 1 | 2025-11-11 03:52:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-11 03:52:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-11 03:52:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-11 03:52:06 ERROR: BUSCO analysis failed!
2025-11-11 03:52:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-11 05:43:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-11 05:43:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 05:43:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 05:43:41 ERROR: BUSCO analysis failed!
2025-11-11 05:43:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-11 06:17:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-11 06:17:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 06:17:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 06:17:18 ERROR: BUSCO analysis failed!
2025-11-11 06:17:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72417452/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72417452/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot |
| 1 | 2025-11-11 23:06:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-11 23:06:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 23:06:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 23:06:32 ERROR: BUSCO analysis failed!
2025-11-11 23:06:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-11 23:17:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-11 23:17:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 23:17:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 23:17:04 ERROR: BUSCO analysis failed!
2025-11-11 23:17:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-11 23:35:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-11 23:35:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 23:35:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-11 23:35:59 ERROR: BUSCO analysis failed!
2025-11-11 23:35:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 04:51:52 ERROR: No genes were recognized by BUSCO. Please check the content oShow full stderr2025-11-12 04:51:52 ERROR: No genes were recognized by BUSCO. Please check the content of your input file.
2025-11-12 04:51:52 ERROR: BUSCO analysis failed!
2025-11-12 04:51:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 01:56:08 ERROR: No genes were recognized by BUSCO. Please check the content oShow full stderr2025-11-12 01:56:08 ERROR: No genes were recognized by BUSCO. Please check the content of your input file.
2025-11-12 01:56:08 ERROR: BUSCO analysis failed!
2025-11-12 01:56:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 01:56:07 ERROR: No genes were recognized by BUSCO. Please check the content oShow full stderr2025-11-12 01:56:07 ERROR: No genes were recognized by BUSCO. Please check the content of your input file.
2025-11-12 01:56:07 ERROR: BUSCO analysis failed!
2025-11-12 01:56:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 07:17:59 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-11-12 07:17:59 ERROR: The input file does not contain nucleotide sequences.
2025-11-12 07:17:59 ERROR: BUSCO analysis failed!
2025-11-12 07:17:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 05:00:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 05:00:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 05:00:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 05:00:41 ERROR: BUSCO analysis failed!
2025-11-12 05:00:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 13:12:58 ERROR: No genes were recognized by BUSCO. Please check the content oShow full stderr2025-11-12 13:12:58 ERROR: No genes were recognized by BUSCO. Please check the content of your input file.
2025-11-12 13:12:58 ERROR: BUSCO analysis failed!
2025-11-12 13:12:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 14:57:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 14:57:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-12 14:57:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-12 14:57:44 ERROR: BUSCO analysis failed!
2025-11-12 14:57:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 18:17:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 18:17:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 18:17:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 18:17:10 ERROR: BUSCO analysis failed!
2025-11-12 18:17:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 13:34:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 13:34:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 13:34:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 13:34:29 ERROR: BUSCO analysis failed!
2025-11-12 13:34:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 13:34:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 13:34:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 13:34:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 13:34:34 ERROR: BUSCO analysis failed!
2025-11-12 13:34:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 18:32:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 18:32:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 18:32:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 18:32:14 ERROR: BUSCO analysis failed!
2025-11-12 18:32:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 18:32:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 18:32:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 18:32:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 18:32:13 ERROR: BUSCO analysis failed!
2025-11-12 18:32:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 18:32:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 18:32:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 18:32:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 18:32:15 ERROR: BUSCO analysis failed!
2025-11-12 18:32:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 18:32:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 18:32:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 18:32:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 18:32:07 ERROR: BUSCO analysis failed!
2025-11-12 18:32:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 13:34:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 13:34:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 13:34:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 13:34:43 ERROR: BUSCO analysis failed!
2025-11-12 13:34:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 13:42:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 13:42:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 13:42:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 13:42:11 ERROR: BUSCO analysis failed!
2025-11-12 13:42:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 13:42:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 13:42:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 13:42:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-12 13:42:32 ERROR: BUSCO analysis failed!
2025-11-12 13:42:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-12 18:39:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-12 18:39:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-12 18:39:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-12 18:39:42 ERROR: BUSCO analysis failed!
2025-11-12 18:39:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 01:51:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 01:51:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-13 01:51:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-13 01:51:42 ERROR: BUSCO analysis failed!
2025-11-13 01:51:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 01:51:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 01:51:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-13 01:51:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-13 01:51:41 ERROR: BUSCO analysis failed!
2025-11-13 01:51:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 07:02:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 07:02:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz'
2025-11-13 07:02:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz'
2025-11-13 07:02:46 ERROR: BUSCO analysis failed!
2025-11-13 07:02:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 07:34:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 07:34:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 07:34:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 07:34:45 ERROR: BUSCO analysis failed!
2025-11-13 07:34:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 03:13:35 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 03:13:35 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-13 03:13:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-13 03:13:35 ERROR: BUSCO analysis failed!
2025-11-13 03:13:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 08:21:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 08:21:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-13 08:21:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-13 08:21:16 ERROR: BUSCO analysis failed!
2025-11-13 08:21:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72481253/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72481253/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot |
| 1 | 2025-11-13 10:30:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 10:30:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 10:30:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 10:30:44 ERROR: BUSCO analysis failed!
2025-11-13 10:30:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 10:37:49 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-11-13 10:37:49 ERROR: The input file does not contain nucleotide sequences.
2025-11-13 10:37:49 ERROR: BUSCO analysis failed!
2025-11-13 10:37:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 13:20:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 13:20:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 13:20:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 13:20:08 ERROR: BUSCO analysis failed!
2025-11-13 13:20:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 11:57:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 11:57:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 11:57:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 11:57:15 ERROR: BUSCO analysis failed!
2025-11-13 11:57:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 14:57:31 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 14:57:31 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 14:57:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 14:57:31 ERROR: BUSCO analysis failed!
2025-11-13 14:57:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 15:21:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 15:21:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 15:21:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 15:21:11 ERROR: BUSCO analysis failed!
2025-11-13 15:21:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-13 15:31:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-13 15:31:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 15:31:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-13 15:31:29 ERROR: BUSCO analysis failed!
2025-11-13 15:31:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 08:37:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 08:37:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 08:37:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 08:37:44 ERROR: BUSCO analysis failed!
2025-11-14 08:37:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 03:43:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:43:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:43:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:43:14 ERROR: BUSCO analysis failed!
2025-11-14 03:43:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 08:44:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 08:44:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 08:44:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 08:44:36 ERROR: BUSCO analysis failed!
2025-11-14 08:44:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 03:45:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:45:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:45:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:45:32 ERROR: BUSCO analysis failed!
2025-11-14 03:45:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 08:46:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 08:46:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 08:46:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 08:46:03 ERROR: BUSCO analysis failed!
2025-11-14 08:46:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 03:48:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:48:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:48:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:48:01 ERROR: BUSCO analysis failed!
2025-11-14 03:48:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 03:48:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:48:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:48:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:48:53 ERROR: BUSCO analysis failed!
2025-11-14 03:48:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 03:50:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:50:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:50:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:50:22 ERROR: BUSCO analysis failed!
2025-11-14 03:50:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 00:52:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 00:52:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 00:52:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 00:52:57 ERROR: BUSCO analysis failed!
2025-11-14 00:52:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 03:53:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:53:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:53:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:53:04 ERROR: BUSCO analysis failed!
2025-11-14 03:53:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 00:53:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 00:53:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 00:53:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 00:53:55 ERROR: BUSCO analysis failed!
2025-11-14 00:53:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 00:56:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 00:56:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 00:56:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 00:56:58 ERROR: BUSCO analysis failed!
2025-11-14 00:56:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 03:53:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:53:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:53:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:53:01 ERROR: BUSCO analysis failed!
2025-11-14 03:53:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 03:56:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:56:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:56:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:56:29 ERROR: BUSCO analysis failed!
2025-11-14 03:56:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 08:49:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 08:49:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 08:49:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 08:49:42 ERROR: BUSCO analysis failed!
2025-11-14 08:49:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 03:57:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:57:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:57:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:57:07 ERROR: BUSCO analysis failed!
2025-11-14 03:57:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:01:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:01:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:01:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:01:01 ERROR: BUSCO analysis failed!
2025-11-14 01:01:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 08:55:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 08:55:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 08:55:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 08:55:43 ERROR: BUSCO analysis failed!
2025-11-14 08:55:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:06:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:06:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:06:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:06:07 ERROR: BUSCO analysis failed!
2025-11-14 01:06:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 03:59:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:59:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:59:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:59:01 ERROR: BUSCO analysis failed!
2025-11-14 03:59:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:09:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:09:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:09:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:09:42 ERROR: BUSCO analysis failed!
2025-11-14 04:09:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:20:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:20:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:20:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:20:20 ERROR: BUSCO analysis failed!
2025-11-14 01:20:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:09:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:09:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:09:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:09:32 ERROR: BUSCO analysis failed!
2025-11-14 04:09:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 09:08:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 09:08:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 09:08:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 09:08:42 ERROR: BUSCO analysis failed!
2025-11-14 09:08:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:24:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:24:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:24:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:24:22 ERROR: BUSCO analysis failed!
2025-11-14 01:24:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:26:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:26:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:26:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:26:24 ERROR: BUSCO analysis failed!
2025-11-14 04:26:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:26:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:26:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:26:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:26:32 ERROR: BUSCO analysis failed!
2025-11-14 04:26:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:28:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:28:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:28:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:28:49 ERROR: BUSCO analysis failed!
2025-11-14 04:28:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:01:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:01:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:01:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:01:02 ERROR: BUSCO analysis failed!
2025-11-14 01:01:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:04:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:04:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:04:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:04:19 ERROR: BUSCO analysis failed!
2025-11-14 04:04:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:05:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:05:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:05:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:05:39 ERROR: BUSCO analysis failed!
2025-11-14 04:05:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:12:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:12:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:12:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:12:54 ERROR: BUSCO analysis failed!
2025-11-14 04:12:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:15:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:15:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:15:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:15:09 ERROR: BUSCO analysis failed!
2025-11-14 04:15:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:15:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:15:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:15:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:15:44 ERROR: BUSCO analysis failed!
2025-11-14 04:15:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:19:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:19:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:19:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:19:45 ERROR: BUSCO analysis failed!
2025-11-14 04:19:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:16:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:16:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:16:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:16:15 ERROR: BUSCO analysis failed!
2025-11-14 01:16:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:21:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:21:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:21:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:21:34 ERROR: BUSCO analysis failed!
2025-11-14 04:21:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:35:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:35:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:35:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:35:38 ERROR: BUSCO analysis failed!
2025-11-14 04:35:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:54:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:54:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:54:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:54:13 ERROR: BUSCO analysis failed!
2025-11-14 04:54:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:24:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:24:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:24:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:24:24 ERROR: BUSCO analysis failed!
2025-11-14 01:24:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:27:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:27:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:27:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:27:38 ERROR: BUSCO analysis failed!
2025-11-14 04:27:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:06:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:06:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:06:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:06:05 ERROR: BUSCO analysis failed!
2025-11-14 01:06:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:12:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:12:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:12:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:12:11 ERROR: BUSCO analysis failed!
2025-11-14 01:12:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:12:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:12:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:12:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:12:10 ERROR: BUSCO analysis failed!
2025-11-14 01:12:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 03:59:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 03:59:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:59:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 03:59:42 ERROR: BUSCO analysis failed!
2025-11-14 03:59:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:07:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:07:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:07:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:07:06 ERROR: BUSCO analysis failed!
2025-11-14 04:07:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:08:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:08:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:08:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:08:22 ERROR: BUSCO analysis failed!
2025-11-14 04:08:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:17:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:17:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:17:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:17:15 ERROR: BUSCO analysis failed!
2025-11-14 01:17:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:12:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:12:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:12:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:12:24 ERROR: BUSCO analysis failed!
2025-11-14 04:12:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:17:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:17:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:17:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:17:49 ERROR: BUSCO analysis failed!
2025-11-14 04:17:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:21:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:21:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:21:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:21:37 ERROR: BUSCO analysis failed!
2025-11-14 04:21:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:27:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:27:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:27:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:27:39 ERROR: BUSCO analysis failed!
2025-11-14 04:27:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:36:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:36:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:36:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:36:46 ERROR: BUSCO analysis failed!
2025-11-14 04:36:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:39:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:39:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:39:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:39:27 ERROR: BUSCO analysis failed!
2025-11-14 04:39:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:42:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:42:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:42:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:42:08 ERROR: BUSCO analysis failed!
2025-11-14 04:42:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:34:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:34:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:34:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:34:32 ERROR: BUSCO analysis failed!
2025-11-14 01:34:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:37:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:37:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:37:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:37:34 ERROR: BUSCO analysis failed!
2025-11-14 01:37:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:29:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:29:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:29:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:29:09 ERROR: BUSCO analysis failed!
2025-11-14 04:29:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:31:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:31:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:31:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:31:46 ERROR: BUSCO analysis failed!
2025-11-14 04:31:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:31:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:31:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:31:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:31:43 ERROR: BUSCO analysis failed!
2025-11-14 04:31:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:30:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:30:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:30:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:30:30 ERROR: BUSCO analysis failed!
2025-11-14 01:30:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:32:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:32:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:32:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:32:32 ERROR: BUSCO analysis failed!
2025-11-14 01:32:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:33:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:33:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:33:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:33:04 ERROR: BUSCO analysis failed!
2025-11-14 04:33:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:38:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:38:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:38:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:38:03 ERROR: BUSCO analysis failed!
2025-11-14 04:38:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:44:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:44:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:44:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:44:48 ERROR: BUSCO analysis failed!
2025-11-14 04:44:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:46:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:46:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:46:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:46:05 ERROR: BUSCO analysis failed!
2025-11-14 04:46:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:47:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:47:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:47:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:47:29 ERROR: BUSCO analysis failed!
2025-11-14 04:47:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:39:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:39:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:39:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:39:36 ERROR: BUSCO analysis failed!
2025-11-14 01:39:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:49:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:49:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:49:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:49:48 ERROR: BUSCO analysis failed!
2025-11-14 04:49:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:50:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:50:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:50:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:50:08 ERROR: BUSCO analysis failed!
2025-11-14 04:50:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:44:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:44:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:44:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:44:25 ERROR: BUSCO analysis failed!
2025-11-14 04:44:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:42:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:42:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:42:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:42:39 ERROR: BUSCO analysis failed!
2025-11-14 01:42:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:54:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:54:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:54:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:54:51 ERROR: BUSCO analysis failed!
2025-11-14 04:54:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:35:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:35:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:35:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:35:32 ERROR: BUSCO analysis failed!
2025-11-14 01:35:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 02:10:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 02:10:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:10:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:10:56 ERROR: BUSCO analysis failed!
2025-11-14 02:10:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:02:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:02:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:02:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:02:20 ERROR: BUSCO analysis failed!
2025-11-14 05:02:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 02:11:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 02:11:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:11:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:11:57 ERROR: BUSCO analysis failed!
2025-11-14 02:11:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 02:13:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 02:13:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:13:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:13:58 ERROR: BUSCO analysis failed!
2025-11-14 02:13:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:04:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:04:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:04:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:04:22 ERROR: BUSCO analysis failed!
2025-11-14 05:04:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 02:14:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 02:14:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:14:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:14:59 ERROR: BUSCO analysis failed!
2025-11-14 02:14:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 02:16:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 02:16:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:16:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:16:59 ERROR: BUSCO analysis failed!
2025-11-14 02:16:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:05:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:05:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:05:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:05:49 ERROR: BUSCO analysis failed!
2025-11-14 05:05:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 02:17:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 02:17:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:17:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:17:59 ERROR: BUSCO analysis failed!
2025-11-14 02:17:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:09:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:09:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:09:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:09:27 ERROR: BUSCO analysis failed!
2025-11-14 05:09:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:13:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:13:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:13:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:13:13 ERROR: BUSCO analysis failed!
2025-11-14 05:13:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 02:20:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 02:20:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:20:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:20:01 ERROR: BUSCO analysis failed!
2025-11-14 02:20:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:17:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:17:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:17:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:17:17 ERROR: BUSCO analysis failed!
2025-11-14 05:17:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:19:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:19:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:19:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:19:53 ERROR: BUSCO analysis failed!
2025-11-14 05:19:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:20:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:20:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:20:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:20:44 ERROR: BUSCO analysis failed!
2025-11-14 05:20:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:43:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:43:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:43:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:43:24 ERROR: BUSCO analysis failed!
2025-11-14 04:43:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:40:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:40:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:40:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:40:37 ERROR: BUSCO analysis failed!
2025-11-14 01:40:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:52:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:52:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:52:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:52:29 ERROR: BUSCO analysis failed!
2025-11-14 04:52:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:47:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:47:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:47:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:47:43 ERROR: BUSCO analysis failed!
2025-11-14 01:47:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:48:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:48:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:48:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:48:03 ERROR: BUSCO analysis failed!
2025-11-14 04:48:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:52:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:52:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:52:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:52:46 ERROR: BUSCO analysis failed!
2025-11-14 04:52:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:59:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:59:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:59:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:59:50 ERROR: BUSCO analysis failed!
2025-11-14 01:59:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 02:03:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 02:03:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:03:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:03:53 ERROR: BUSCO analysis failed!
2025-11-14 02:03:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 02:06:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 02:06:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:06:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:06:55 ERROR: BUSCO analysis failed!
2025-11-14 02:06:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:00:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:00:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:00:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:00:48 ERROR: BUSCO analysis failed!
2025-11-14 05:00:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:00:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:00:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:00:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:00:49 ERROR: BUSCO analysis failed!
2025-11-14 05:00:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:03:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:03:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:03:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:03:26 ERROR: BUSCO analysis failed!
2025-11-14 05:03:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 02:06:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 02:06:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:06:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 02:06:54 ERROR: BUSCO analysis failed!
2025-11-14 02:06:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:06:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:06:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:06:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:06:50 ERROR: BUSCO analysis failed!
2025-11-14 05:06:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 05:09:31 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 05:09:31 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:09:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 05:09:31 ERROR: BUSCO analysis failed!
2025-11-14 05:09:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:55:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:55:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:55:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:55:27 ERROR: BUSCO analysis failed!
2025-11-14 04:55:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 01:43:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 01:43:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:43:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 01:43:39 ERROR: BUSCO analysis failed!
2025-11-14 01:43:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 04:44:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 04:44:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:44:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 04:44:26 ERROR: BUSCO analysis failed!
2025-11-14 04:44:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /jetstream2/scratch/main/jobs-vgp/72520540/tool_script.sh: line 23: 77 Killed Show full stderr/jetstream2/scratch/main/jobs-vgp/72520540/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot |
| 1 | 2025-11-14 22:29:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:29:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:29:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:29:19 ERROR: BUSCO analysis failed!
2025-11-14 22:29:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 14:30:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 14:30:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:30:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:30:01 ERROR: BUSCO analysis failed!
2025-11-14 14:30:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 17:34:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 17:34:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:34:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:34:54 ERROR: BUSCO analysis failed!
2025-11-14 17:34:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 22:32:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:32:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:32:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:32:12 ERROR: BUSCO analysis failed!
2025-11-14 22:32:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 17:33:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 17:33:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:33:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:33:44 ERROR: BUSCO analysis failed!
2025-11-14 17:33:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 17:43:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 17:43:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:43:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:43:19 ERROR: BUSCO analysis failed!
2025-11-14 17:43:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 14:36:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 14:36:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:36:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:36:14 ERROR: BUSCO analysis failed!
2025-11-14 14:36:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 14:38:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 14:38:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:38:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:38:33 ERROR: BUSCO analysis failed!
2025-11-14 14:38:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 17:35:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 17:35:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:35:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:35:47 ERROR: BUSCO analysis failed!
2025-11-14 17:35:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 14:39:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 14:39:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:39:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:39:36 ERROR: BUSCO analysis failed!
2025-11-14 14:39:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 22:40:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:40:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:40:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:40:12 ERROR: BUSCO analysis failed!
2025-11-14 22:40:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 17:44:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 17:44:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:44:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:44:04 ERROR: BUSCO analysis failed!
2025-11-14 17:44:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 22:32:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:32:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:32:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:32:15 ERROR: BUSCO analysis failed!
2025-11-14 22:32:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 14:33:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 14:33:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:33:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:33:03 ERROR: BUSCO analysis failed!
2025-11-14 14:33:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 14:42:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 14:42:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:42:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:42:52 ERROR: BUSCO analysis failed!
2025-11-14 14:42:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 22:38:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:38:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:38:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:38:41 ERROR: BUSCO analysis failed!
2025-11-14 22:38:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 17:42:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 17:42:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:42:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:42:01 ERROR: BUSCO analysis failed!
2025-11-14 17:42:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 22:44:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:44:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:44:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:44:17 ERROR: BUSCO analysis failed!
2025-11-14 22:44:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 17:34:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 17:34:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:34:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:34:53 ERROR: BUSCO analysis failed!
2025-11-14 17:34:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 14:35:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 14:35:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:35:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:35:12 ERROR: BUSCO analysis failed!
2025-11-14 14:35:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 22:35:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:35:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:35:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:35:10 ERROR: BUSCO analysis failed!
2025-11-14 22:35:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 17:39:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 17:39:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:39:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:39:57 ERROR: BUSCO analysis failed!
2025-11-14 17:39:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 22:35:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:35:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:35:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:35:11 ERROR: BUSCO analysis failed!
2025-11-14 22:35:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 17:43:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 17:43:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:43:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:43:20 ERROR: BUSCO analysis failed!
2025-11-14 17:43:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 17:37:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 17:37:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:37:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 17:37:50 ERROR: BUSCO analysis failed!
2025-11-14 17:37:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 22:38:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:38:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:38:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:38:11 ERROR: BUSCO analysis failed!
2025-11-14 22:38:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 22:41:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:41:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:41:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:41:11 ERROR: BUSCO analysis failed!
2025-11-14 22:41:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 22:41:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:41:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:41:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 22:41:41 ERROR: BUSCO analysis failed!
2025-11-14 22:41:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 14:43:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 14:43:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:43:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-14 14:43:06 ERROR: BUSCO analysis failed!
2025-11-14 14:43:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-14 22:46:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-14 22:46:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-14 22:46:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-14 22:46:48 ERROR: BUSCO analysis failed!
2025-11-14 22:46:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-15 01:39:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-15 01:39:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-15 01:39:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-15 01:39:06 ERROR: BUSCO analysis failed!
2025-11-15 01:39:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-15 06:40:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-15 06:40:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-15 06:40:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-15 06:40:18 ERROR: BUSCO analysis failed!
2025-11-15 06:40:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-15 09:28:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-15 09:28:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-15 09:28:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-15 09:28:20 ERROR: BUSCO analysis failed!
2025-11-15 09:28:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-15 09:46:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-15 09:46:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-15 09:46:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-15 09:46:30 ERROR: BUSCO analysis failed!
2025-11-15 09:46:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-15 16:27:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-15 16:27:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-15 16:27:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-15 16:27:10 ERROR: BUSCO analysis failed!
2025-11-15 16:27:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-16 01:09:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-16 01:09:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz'
2025-11-16 01:09:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz'
2025-11-16 01:09:58 ERROR: BUSCO analysis failed!
2025-11-16 01:09:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-16 06:18:02 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-11-16 06:18:02 ERROR: The input file does not contain nucleotide sequences.
2025-11-16 06:18:02 ERROR: BUSCO analysis failed!
2025-11-16 06:18:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-16 01:18:22 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-11-16 01:18:22 ERROR: The input file does not contain nucleotide sequences.
2025-11-16 01:18:22 ERROR: BUSCO analysis failed!
2025-11-16 01:18:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-15 22:30:46 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-11-15 22:30:46 ERROR: The input file does not contain nucleotide sequences.
2025-11-15 22:30:46 ERROR: BUSCO analysis failed!
2025-11-15 22:30:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-16 06:30:32 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-11-16 06:30:32 ERROR: The input file does not contain nucleotide sequences.
2025-11-16 06:30:32 ERROR: BUSCO analysis failed!
2025-11-16 06:30:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /jetstream2/scratch/main/jobs-vgp/72556786/tool_script.sh: line 23: 77 Killed Show full stderr/jetstream2/scratch/main/jobs-vgp/72556786/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot
Process SpawnPoolWorker-218:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/multiprocessing/pool.py", line 131, in worker
put((job, i, result))
File "/usr/local/lib/python3.10/multiprocessing/queues.py", line 377, in put
self._writer.send_bytes(obj)
File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 200, in send_bytes
self._send_bytes(m[offset:offset + size])
File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 405, in _send_bytes
self._send(buf)
File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 368, in _send
n = write(self._handle, buf)
BrokenPipeError: [Errno 32] Broken pipe
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/multiprocessing/process.py", line 314, in _bootstrap
self.run()
File "/usr/local/lib/python3.10/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/usr/local/lib/python3.10/multiprocessing/pool.py", line 136, in worker
put((job, i, (False, wrapped)))
File "/usr/local/lib/python3.10/multiprocessing/queues.py", line 377, in put
self._writer.send_bytes(obj)
File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 200, in send_bytes
self._send_bytes(m[offset:offset + size])
File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 404, in _send_bytes
self._send(header)
File "/usr/local/lib/python3.10/multiprocessing/connection.py", line 368, in _send
n = write(self._handle, buf)
BrokenPipeError: [Errno 32] Broken pipe |
| 1 | 2025-11-16 10:14:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-16 10:14:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-16 10:14:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-16 10:14:59 ERROR: BUSCO analysis failed!
2025-11-16 10:14:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-16 21:39:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-16 21:39:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-16 21:39:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-16 21:39:48 ERROR: BUSCO analysis failed!
2025-11-16 21:39:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 03:10:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 03:10:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:10:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:10:42 ERROR: BUSCO analysis failed!
2025-11-17 03:10:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 03:13:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 03:13:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:13:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:13:30 ERROR: BUSCO analysis failed!
2025-11-17 03:13:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 03:16:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 03:16:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:16:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:16:34 ERROR: BUSCO analysis failed!
2025-11-17 03:16:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 03:21:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 03:21:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:21:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:21:34 ERROR: BUSCO analysis failed!
2025-11-17 03:21:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 03:18:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 03:18:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:18:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 03:18:08 ERROR: BUSCO analysis failed!
2025-11-17 03:18:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 03:35:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 03:35:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz'
2025-11-17 03:35:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz'
2025-11-17 03:35:40 ERROR: BUSCO analysis failed!
2025-11-17 03:35:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 08:42:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 08:42:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz'
2025-11-17 08:42:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/lactobacillales_odb10/refseq_db.faa.gz'
2025-11-17 08:42:44 ERROR: BUSCO analysis failed!
2025-11-17 08:42:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 09:24:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 09:24:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 09:24:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 09:24:45 ERROR: BUSCO analysis failed!
2025-11-17 09:24:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 04:33:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 04:33:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-17 04:33:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-17 04:33:03 ERROR: BUSCO analysis failed!
2025-11-17 04:33:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 09:41:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 09:41:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-17 09:41:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-17 09:41:09 ERROR: BUSCO analysis failed!
2025-11-17 09:41:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 11:29:31 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 11:29:31 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 11:29:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 11:29:31 ERROR: BUSCO analysis failed!
2025-11-17 11:29:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-17 11:33:35 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-17 11:33:35 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 11:33:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-17 11:33:35 ERROR: BUSCO analysis failed!
2025-11-17 11:33:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /jetstream2/scratch/main/jobs-vgp/72593824/tool_script.sh: line 23: 77 Killed Show full stderr/jetstream2/scratch/main/jobs-vgp/72593824/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot |
| 1 | /jetstream2/scratch/main/jobs-vgp/72593841/tool_script.sh: line 23: 77 Killed Show full stderr/jetstream2/scratch/main/jobs-vgp/72593841/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot |
| 1 | 2025-11-18 04:03:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 04:03:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 04:03:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 04:03:22 ERROR: BUSCO analysis failed!
2025-11-18 04:03:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:19:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:19:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:19:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:19:27 ERROR: BUSCO analysis failed!
2025-11-18 10:19:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 02:40:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 02:40:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 02:40:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 02:40:43 ERROR: BUSCO analysis failed!
2025-11-18 02:40:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 05:51:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 05:51:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 05:51:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 05:51:26 ERROR: BUSCO analysis failed!
2025-11-18 05:51:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 06:06:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 06:06:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 06:06:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 06:06:30 ERROR: BUSCO analysis failed!
2025-11-18 06:06:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:04:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:04:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:04:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:04:56 ERROR: BUSCO analysis failed!
2025-11-18 11:04:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 03:05:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 03:05:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 03:05:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 03:05:05 ERROR: BUSCO analysis failed!
2025-11-18 03:05:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:04:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:04:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:04:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:04:37 ERROR: BUSCO analysis failed!
2025-11-18 11:04:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:18:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:18:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:18:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:18:24 ERROR: BUSCO analysis failed!
2025-11-18 11:18:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:24:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:24:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-18 11:24:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-18 11:24:22 ERROR: BUSCO analysis failed!
2025-11-18 11:24:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:27:29 ERROR: Retraining did not complete correctly. Check your Augustus confShow full stderr2025-11-18 11:27:29 ERROR: Retraining did not complete correctly. Check your Augustus config path environment variable.
2025-11-18 11:27:29 ERROR: BUSCO analysis failed!
2025-11-18 11:27:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:31:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:31:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:31:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:31:55 ERROR: BUSCO analysis failed!
2025-11-18 11:31:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 08:57:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 08:57:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:57:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:57:28 ERROR: BUSCO analysis failed!
2025-11-18 08:57:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:55:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:55:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:55:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:55:46 ERROR: BUSCO analysis failed!
2025-11-18 13:55:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:55:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:55:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:55:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:55:58 ERROR: BUSCO analysis failed!
2025-11-18 13:55:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 09:59:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 09:59:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 09:59:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 09:59:57 ERROR: BUSCO analysis failed!
2025-12-03 09:59:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:07:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:07:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:07:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:07:28 ERROR: BUSCO analysis failed!
2025-11-18 09:07:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:02:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:02:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:02:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:02:17 ERROR: BUSCO analysis failed!
2025-11-18 09:02:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:02:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:02:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:02:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:02:19 ERROR: BUSCO analysis failed!
2025-11-18 09:02:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:04:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:04:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:04:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:04:30 ERROR: BUSCO analysis failed!
2025-11-18 09:04:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:10:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:10:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:10:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:10:57 ERROR: BUSCO analysis failed!
2025-11-18 09:10:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:04:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:04:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:04:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:04:27 ERROR: BUSCO analysis failed!
2025-11-18 09:04:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:14:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:14:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:14:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:14:27 ERROR: BUSCO analysis failed!
2025-11-18 09:14:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 08:57:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 08:57:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:57:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:57:24 ERROR: BUSCO analysis failed!
2025-11-18 08:57:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:07:31 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:07:31 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:07:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:07:31 ERROR: BUSCO analysis failed!
2025-11-18 09:07:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:00:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:00:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:00:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:00:16 ERROR: BUSCO analysis failed!
2025-11-18 09:00:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:15:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:15:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:15:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:15:17 ERROR: BUSCO analysis failed!
2025-11-18 09:15:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:19:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:19:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:19:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:19:44 ERROR: BUSCO analysis failed!
2025-11-18 09:19:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:03:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:03:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:03:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:03:24 ERROR: BUSCO analysis failed!
2025-11-18 14:03:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:23:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:23:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:23:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:23:18 ERROR: BUSCO analysis failed!
2025-11-18 09:23:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:08:31 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:08:31 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:08:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:08:31 ERROR: BUSCO analysis failed!
2025-11-18 09:08:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:36:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:36:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:36:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:36:33 ERROR: BUSCO analysis failed!
2025-11-18 09:36:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:37:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:37:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:37:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:37:37 ERROR: BUSCO analysis failed!
2025-11-18 09:37:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:11:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:11:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:11:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:11:25 ERROR: BUSCO analysis failed!
2025-11-18 09:11:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:19:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:19:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:19:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:19:12 ERROR: BUSCO analysis failed!
2025-11-18 09:19:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:28:35 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:28:35 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:28:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:28:35 ERROR: BUSCO analysis failed!
2025-11-18 09:28:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 08:58:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 08:58:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:58:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:58:15 ERROR: BUSCO analysis failed!
2025-11-18 08:58:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:28:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:28:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:28:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:28:34 ERROR: BUSCO analysis failed!
2025-11-18 09:28:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:39:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:39:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:39:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:39:37 ERROR: BUSCO analysis failed!
2025-11-18 09:39:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:00:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:00:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:00:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:00:14 ERROR: BUSCO analysis failed!
2025-11-18 09:00:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:42:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:42:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:42:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:42:39 ERROR: BUSCO analysis failed!
2025-11-18 09:42:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:47:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:47:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:47:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:47:37 ERROR: BUSCO analysis failed!
2025-11-18 09:47:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:50:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:50:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:50:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:50:46 ERROR: BUSCO analysis failed!
2025-11-18 09:50:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:54:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:54:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:54:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:54:37 ERROR: BUSCO analysis failed!
2025-11-18 09:54:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:06:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:06:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:06:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:06:28 ERROR: BUSCO analysis failed!
2025-11-18 09:06:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:24:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:24:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:24:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:24:14 ERROR: BUSCO analysis failed!
2025-11-18 09:24:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:07:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:07:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:07:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:07:32 ERROR: BUSCO analysis failed!
2025-11-18 14:07:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:08:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:08:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:08:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:08:21 ERROR: BUSCO analysis failed!
2025-11-18 14:08:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:10:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:10:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:10:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:10:32 ERROR: BUSCO analysis failed!
2025-11-18 09:10:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 13:00:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 13:00:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 13:00:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 13:00:09 ERROR: BUSCO analysis failed!
2025-12-03 13:00:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 03:42:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 03:42:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:42:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:42:48 ERROR: BUSCO analysis failed!
2025-11-20 03:42:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:32:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:32:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:32:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:32:22 ERROR: BUSCO analysis failed!
2025-11-18 09:32:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:05:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:05:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:05:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:05:23 ERROR: BUSCO analysis failed!
2025-11-18 14:05:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:58:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:58:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:58:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:58:44 ERROR: BUSCO analysis failed!
2025-11-18 09:58:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 13:02:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 13:02:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 13:02:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 13:02:49 ERROR: BUSCO analysis failed!
2025-12-03 13:02:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:58:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:58:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:58:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:58:51 ERROR: BUSCO analysis failed!
2025-11-18 09:58:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:11:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:11:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:11:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:11:24 ERROR: BUSCO analysis failed!
2025-11-18 14:11:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:13:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:13:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:13:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:13:07 ERROR: BUSCO analysis failed!
2025-11-18 09:13:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:14:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:14:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:14:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:14:45 ERROR: BUSCO analysis failed!
2025-11-18 09:14:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:14:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:14:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:14:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:14:01 ERROR: BUSCO analysis failed!
2025-11-18 14:14:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:16:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:16:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:16:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:16:44 ERROR: BUSCO analysis failed!
2025-11-18 09:16:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:18:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:18:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:18:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:18:47 ERROR: BUSCO analysis failed!
2025-11-18 09:18:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 13:00:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 13:00:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 13:00:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 13:00:12 ERROR: BUSCO analysis failed!
2025-12-03 13:00:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 03:53:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 03:53:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:53:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:53:34 ERROR: BUSCO analysis failed!
2025-11-20 03:53:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 03:57:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 03:57:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:57:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:57:27 ERROR: BUSCO analysis failed!
2025-11-20 03:57:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:17:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:17:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:17:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:17:33 ERROR: BUSCO analysis failed!
2025-11-18 14:17:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 03:50:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 03:50:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:50:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:50:26 ERROR: BUSCO analysis failed!
2025-11-20 03:50:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:00:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:00:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:00:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:00:39 ERROR: BUSCO analysis failed!
2025-11-20 04:00:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:52:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:52:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:52:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:52:51 ERROR: BUSCO analysis failed!
2025-11-18 09:52:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:08:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:08:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:08:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:08:23 ERROR: BUSCO analysis failed!
2025-11-20 04:08:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:17:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:17:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:17:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:17:13 ERROR: BUSCO analysis failed!
2025-11-20 04:17:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:20:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:20:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:20:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:20:42 ERROR: BUSCO analysis failed!
2025-11-20 04:20:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 06:55:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 06:55:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 06:55:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 06:55:36 ERROR: BUSCO analysis failed!
2025-11-18 06:55:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:23:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:23:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:23:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:23:34 ERROR: BUSCO analysis failed!
2025-11-20 04:23:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:14:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:14:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:14:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:14:34 ERROR: BUSCO analysis failed!
2025-11-18 10:14:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:16:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:16:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:16:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:16:36 ERROR: BUSCO analysis failed!
2025-11-18 10:16:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:26:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:26:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:26:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:26:13 ERROR: BUSCO analysis failed!
2025-11-18 10:26:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:25:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:25:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:25:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:25:07 ERROR: BUSCO analysis failed!
2025-11-18 09:25:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:26:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:26:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:26:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:26:30 ERROR: BUSCO analysis failed!
2025-11-20 04:26:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:10:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:10:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:10:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:10:49 ERROR: BUSCO analysis failed!
2025-11-18 11:10:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:14:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:14:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:14:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:14:25 ERROR: BUSCO analysis failed!
2025-11-18 11:14:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:33:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:33:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:33:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:33:30 ERROR: BUSCO analysis failed!
2025-11-18 11:33:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:37:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:37:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:37:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:37:34 ERROR: BUSCO analysis failed!
2025-11-18 11:37:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:47:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:47:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:47:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:47:40 ERROR: BUSCO analysis failed!
2025-11-18 11:47:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:53:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:53:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:53:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:53:26 ERROR: BUSCO analysis failed!
2025-11-18 11:53:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:04:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:04:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:04:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:04:05 ERROR: BUSCO analysis failed!
2025-11-18 12:04:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:25:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:25:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:25:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:25:58 ERROR: BUSCO analysis failed!
2025-11-18 12:25:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:33:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:33:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:33:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:33:37 ERROR: BUSCO analysis failed!
2025-11-18 12:33:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:38:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:38:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:38:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:38:15 ERROR: BUSCO analysis failed!
2025-11-18 12:38:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 03:46:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 03:46:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:46:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:46:29 ERROR: BUSCO analysis failed!
2025-11-20 03:46:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:09:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:09:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:09:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:09:06 ERROR: BUSCO analysis failed!
2025-11-20 04:09:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:33:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:33:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:33:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:33:23 ERROR: BUSCO analysis failed!
2025-11-18 09:33:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:45:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:45:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:45:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:45:53 ERROR: BUSCO analysis failed!
2025-11-18 09:45:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:13:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:13:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:13:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:13:16 ERROR: BUSCO analysis failed!
2025-11-20 04:13:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:30:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:30:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:30:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:30:15 ERROR: BUSCO analysis failed!
2025-11-18 09:30:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:29:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:29:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:29:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:29:32 ERROR: BUSCO analysis failed!
2025-11-20 04:29:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:49:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:49:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:49:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:49:53 ERROR: BUSCO analysis failed!
2025-11-18 09:49:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:39:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:39:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:39:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:39:33 ERROR: BUSCO analysis failed!
2025-11-20 04:39:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:02:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:02:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:02:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:02:48 ERROR: BUSCO analysis failed!
2025-11-18 10:02:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:20:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:20:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:20:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:20:59 ERROR: BUSCO analysis failed!
2025-11-18 09:20:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:05:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:05:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:05:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:05:22 ERROR: BUSCO analysis failed!
2025-11-20 04:05:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:32:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:32:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:32:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:32:48 ERROR: BUSCO analysis failed!
2025-11-20 04:32:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:48:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:48:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:48:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:48:48 ERROR: BUSCO analysis failed!
2025-11-20 04:48:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:06:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:06:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:06:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:06:08 ERROR: BUSCO analysis failed!
2025-11-18 10:06:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:51:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:51:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:51:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:51:39 ERROR: BUSCO analysis failed!
2025-11-20 04:51:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:01:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:01:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:01:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:01:40 ERROR: BUSCO analysis failed!
2025-11-20 05:01:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:09:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:09:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:09:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:09:45 ERROR: BUSCO analysis failed!
2025-11-18 10:09:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:10:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:10:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:10:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:10:38 ERROR: BUSCO analysis failed!
2025-11-18 10:10:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:26:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:26:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:26:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:26:14 ERROR: BUSCO analysis failed!
2025-11-18 10:26:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 10:46:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 10:46:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 10:46:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 10:46:51 ERROR: BUSCO analysis failed!
2025-11-20 10:46:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:37:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:37:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:37:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:37:02 ERROR: BUSCO analysis failed!
2025-11-18 10:37:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:43:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:43:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:43:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:43:07 ERROR: BUSCO analysis failed!
2025-11-18 10:43:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:07:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:07:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:07:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:07:26 ERROR: BUSCO analysis failed!
2025-11-18 11:07:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 08:10:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 08:10:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:10:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:10:03 ERROR: BUSCO analysis failed!
2025-11-18 08:10:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:22:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:22:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:22:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:22:43 ERROR: BUSCO analysis failed!
2025-11-18 11:22:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 08:25:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 08:25:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:25:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:25:45 ERROR: BUSCO analysis failed!
2025-11-18 08:25:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:33:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:33:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:33:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:33:37 ERROR: BUSCO analysis failed!
2025-11-18 11:33:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:13:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:13:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:13:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:13:11 ERROR: BUSCO analysis failed!
2025-11-18 10:13:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:17:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:17:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:17:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:17:59 ERROR: BUSCO analysis failed!
2025-11-18 10:17:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:20:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:20:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:20:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:20:59 ERROR: BUSCO analysis failed!
2025-11-18 10:20:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:40:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:40:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:40:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:40:08 ERROR: BUSCO analysis failed!
2025-11-18 10:40:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:46:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:46:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:46:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:46:18 ERROR: BUSCO analysis failed!
2025-11-18 10:46:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:00:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:00:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:00:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:00:24 ERROR: BUSCO analysis failed!
2025-11-18 11:00:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:32:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:32:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:32:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:32:32 ERROR: BUSCO analysis failed!
2025-11-18 11:32:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:01:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:01:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:01:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:01:13 ERROR: BUSCO analysis failed!
2025-11-18 12:01:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:06:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:06:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:06:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:06:51 ERROR: BUSCO analysis failed!
2025-11-18 12:06:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:02:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:02:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:02:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:02:43 ERROR: BUSCO analysis failed!
2025-11-18 10:02:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:06:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:06:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:06:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:06:54 ERROR: BUSCO analysis failed!
2025-11-18 10:06:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:12:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:12:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:12:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:12:19 ERROR: BUSCO analysis failed!
2025-11-18 07:12:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:17:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:17:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:17:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:17:09 ERROR: BUSCO analysis failed!
2025-11-18 10:17:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:34:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:34:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:34:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:34:20 ERROR: BUSCO analysis failed!
2025-11-18 09:34:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:19:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:19:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:19:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:19:57 ERROR: BUSCO analysis failed!
2025-11-18 10:19:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:29:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:29:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:29:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:29:00 ERROR: BUSCO analysis failed!
2025-11-18 10:29:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:44:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:44:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:44:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:44:36 ERROR: BUSCO analysis failed!
2025-11-18 11:44:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:29:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:29:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:29:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:29:01 ERROR: BUSCO analysis failed!
2025-11-18 12:29:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:46:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:46:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:46:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:46:07 ERROR: BUSCO analysis failed!
2025-11-18 12:46:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:36:35 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:36:35 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:36:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:36:35 ERROR: BUSCO analysis failed!
2025-11-20 04:36:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:59:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:59:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:59:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:59:13 ERROR: BUSCO analysis failed!
2025-11-18 12:59:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:14:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:14:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:14:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:14:19 ERROR: BUSCO analysis failed!
2025-11-18 13:14:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:38:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:38:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:38:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:38:21 ERROR: BUSCO analysis failed!
2025-11-18 09:38:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:21:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:21:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:21:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:21:28 ERROR: BUSCO analysis failed!
2025-11-18 13:21:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:24:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:24:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:24:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:24:24 ERROR: BUSCO analysis failed!
2025-11-18 13:24:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 06:58:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 06:58:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 06:58:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 06:58:10 ERROR: BUSCO analysis failed!
2025-11-18 06:58:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:03:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:03:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:03:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:03:18 ERROR: BUSCO analysis failed!
2025-11-18 07:03:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:31:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:31:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:31:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:31:26 ERROR: BUSCO analysis failed!
2025-11-18 13:31:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:14:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:14:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:14:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:14:48 ERROR: BUSCO analysis failed!
2025-11-18 07:14:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:34:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:34:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:34:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:34:13 ERROR: BUSCO analysis failed!
2025-11-18 12:34:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:20:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:20:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:20:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:20:49 ERROR: BUSCO analysis failed!
2025-11-20 05:20:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:02:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:02:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:02:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:02:15 ERROR: BUSCO analysis failed!
2025-11-18 13:02:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:32:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:32:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:32:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:32:12 ERROR: BUSCO analysis failed!
2025-11-20 05:32:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:27:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:27:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:27:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:27:27 ERROR: BUSCO analysis failed!
2025-11-18 13:27:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:40:31 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:40:31 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:40:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:40:31 ERROR: BUSCO analysis failed!
2025-11-18 13:40:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:01:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:01:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:01:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:01:54 ERROR: BUSCO analysis failed!
2025-11-18 07:01:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:06:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:06:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:06:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:06:46 ERROR: BUSCO analysis failed!
2025-11-18 07:06:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:55:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:55:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:55:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:55:32 ERROR: BUSCO analysis failed!
2025-11-18 13:55:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:19:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:19:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:19:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:19:41 ERROR: BUSCO analysis failed!
2025-11-18 07:19:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:59:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:59:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:59:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:59:33 ERROR: BUSCO analysis failed!
2025-11-18 13:59:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:02:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:02:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:02:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:02:40 ERROR: BUSCO analysis failed!
2025-11-18 14:02:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:05:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:05:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:05:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:05:41 ERROR: BUSCO analysis failed!
2025-11-18 14:05:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:29:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:29:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:29:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:29:38 ERROR: BUSCO analysis failed!
2025-11-18 10:29:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 13:04:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 13:04:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 13:04:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 13:04:14 ERROR: BUSCO analysis failed!
2025-12-03 13:04:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:49:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:49:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:49:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:49:13 ERROR: BUSCO analysis failed!
2025-11-18 10:49:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:53:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:53:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:53:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:53:39 ERROR: BUSCO analysis failed!
2025-11-18 10:53:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:57:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:57:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:57:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:57:07 ERROR: BUSCO analysis failed!
2025-11-18 10:57:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:17:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:17:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:17:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:17:26 ERROR: BUSCO analysis failed!
2025-11-18 11:17:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:31:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:31:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:31:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:31:25 ERROR: BUSCO analysis failed!
2025-11-18 10:31:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:34:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:34:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:34:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:34:27 ERROR: BUSCO analysis failed!
2025-11-18 13:34:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:37:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:37:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:37:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:37:30 ERROR: BUSCO analysis failed!
2025-11-18 13:37:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:37:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:37:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:37:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:37:40 ERROR: BUSCO analysis failed!
2025-11-18 07:37:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:45:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:45:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:45:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:45:51 ERROR: BUSCO analysis failed!
2025-11-18 07:45:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:40:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:40:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:40:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:40:33 ERROR: BUSCO analysis failed!
2025-11-18 13:40:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:47:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:47:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:47:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:47:45 ERROR: BUSCO analysis failed!
2025-11-18 13:47:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:59:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:59:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:59:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:59:29 ERROR: BUSCO analysis failed!
2025-11-18 13:59:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:09:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:09:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:09:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:09:52 ERROR: BUSCO analysis failed!
2025-11-18 14:09:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:13:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:13:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:13:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:13:04 ERROR: BUSCO analysis failed!
2025-11-18 14:13:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:30:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:30:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:30:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:30:22 ERROR: BUSCO analysis failed!
2025-11-18 14:30:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:34:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:34:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:34:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:34:50 ERROR: BUSCO analysis failed!
2025-11-18 14:34:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:45:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:45:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:45:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:45:34 ERROR: BUSCO analysis failed!
2025-11-20 04:45:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:55:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:55:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:55:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:55:13 ERROR: BUSCO analysis failed!
2025-11-20 04:55:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 08:20:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 08:20:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:20:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:20:13 ERROR: BUSCO analysis failed!
2025-11-18 08:20:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:55:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:55:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:55:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:55:05 ERROR: BUSCO analysis failed!
2025-11-18 07:55:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:20:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:20:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:20:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:20:27 ERROR: BUSCO analysis failed!
2025-11-18 14:20:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:57:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:57:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:57:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:57:57 ERROR: BUSCO analysis failed!
2025-11-18 10:57:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 08:04:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 08:04:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:04:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 08:04:54 ERROR: BUSCO analysis failed!
2025-11-18 08:04:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:26:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:26:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:26:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:26:12 ERROR: BUSCO analysis failed!
2025-11-18 14:26:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:29:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:29:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:29:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:29:36 ERROR: BUSCO analysis failed!
2025-11-18 14:29:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:06:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:06:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:06:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:06:04 ERROR: BUSCO analysis failed!
2025-11-18 11:06:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:59:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:59:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:59:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:59:12 ERROR: BUSCO analysis failed!
2025-11-18 14:59:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 15:08:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 15:08:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 15:08:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 15:08:23 ERROR: BUSCO analysis failed!
2025-11-18 15:08:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 15:15:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 15:15:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 15:15:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 15:15:02 ERROR: BUSCO analysis failed!
2025-11-18 15:15:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 15:58:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 15:58:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 15:58:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 15:58:58 ERROR: BUSCO analysis failed!
2025-11-18 15:58:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 16:06:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 16:06:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 16:06:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 16:06:48 ERROR: BUSCO analysis failed!
2025-11-18 16:06:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 16:15:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 16:15:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 16:15:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 16:15:52 ERROR: BUSCO analysis failed!
2025-11-18 16:15:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:35:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:35:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:35:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:35:48 ERROR: BUSCO analysis failed!
2025-11-20 05:35:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:39:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:39:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:39:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:39:51 ERROR: BUSCO analysis failed!
2025-11-20 05:39:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:54:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:54:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:54:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:54:47 ERROR: BUSCO analysis failed!
2025-11-18 09:54:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:54:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:54:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:54:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:54:48 ERROR: BUSCO analysis failed!
2025-11-18 09:54:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:28:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:28:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:28:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:28:57 ERROR: BUSCO analysis failed!
2025-11-18 11:28:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:33:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:33:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:33:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:33:36 ERROR: BUSCO analysis failed!
2025-11-18 11:33:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:58:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:58:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:58:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:58:52 ERROR: BUSCO analysis failed!
2025-11-18 09:58:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:42:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:42:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:42:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:42:39 ERROR: BUSCO analysis failed!
2025-11-20 04:42:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:44:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:44:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:44:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:44:39 ERROR: BUSCO analysis failed!
2025-11-18 11:44:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:09:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:09:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:09:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:09:51 ERROR: BUSCO analysis failed!
2025-11-18 12:09:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:15:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:15:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:15:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:15:09 ERROR: BUSCO analysis failed!
2025-11-18 12:15:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:00:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:00:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:00:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:00:36 ERROR: BUSCO analysis failed!
2025-11-18 07:00:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:29:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:29:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:29:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:29:50 ERROR: BUSCO analysis failed!
2025-11-18 07:29:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:33:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:33:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:33:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:33:15 ERROR: BUSCO analysis failed!
2025-11-18 07:33:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:37:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:37:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:37:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:37:04 ERROR: BUSCO analysis failed!
2025-11-18 07:37:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:43:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:43:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:43:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:43:00 ERROR: BUSCO analysis failed!
2025-11-18 07:43:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:43:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:43:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:43:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:43:39 ERROR: BUSCO analysis failed!
2025-11-18 07:43:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:19:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:19:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:19:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:19:57 ERROR: BUSCO analysis failed!
2025-11-18 12:19:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:58:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:58:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:58:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:58:46 ERROR: BUSCO analysis failed!
2025-11-20 04:58:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:53:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:53:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:53:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:53:56 ERROR: BUSCO analysis failed!
2025-11-18 14:53:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:04:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:04:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:04:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:04:42 ERROR: BUSCO analysis failed!
2025-11-20 05:04:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:07:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:07:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:07:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:07:43 ERROR: BUSCO analysis failed!
2025-11-20 05:07:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:29:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:29:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:29:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:29:01 ERROR: BUSCO analysis failed!
2025-11-18 09:29:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:29:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:29:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:29:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:29:54 ERROR: BUSCO analysis failed!
2025-11-18 12:29:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:31:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:31:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:31:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:31:49 ERROR: BUSCO analysis failed!
2025-11-18 09:31:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:36:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:36:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:36:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:36:20 ERROR: BUSCO analysis failed!
2025-11-18 09:36:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:10:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:10:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:10:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:10:44 ERROR: BUSCO analysis failed!
2025-11-20 05:10:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:46:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:46:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:46:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:46:37 ERROR: BUSCO analysis failed!
2025-11-18 12:46:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:48:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:48:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:48:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:48:40 ERROR: BUSCO analysis failed!
2025-11-18 09:48:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:49:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:49:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:49:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:49:14 ERROR: BUSCO analysis failed!
2025-11-18 09:49:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:13:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:13:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:13:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:13:44 ERROR: BUSCO analysis failed!
2025-11-20 05:13:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:17:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:17:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:17:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:17:44 ERROR: BUSCO analysis failed!
2025-11-20 05:17:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:13:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:13:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:13:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:13:33 ERROR: BUSCO analysis failed!
2025-11-18 10:13:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:23:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:23:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:23:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:23:48 ERROR: BUSCO analysis failed!
2025-11-20 05:23:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:43:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:43:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:43:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:43:47 ERROR: BUSCO analysis failed!
2025-11-20 05:43:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:47:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:47:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:47:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:47:05 ERROR: BUSCO analysis failed!
2025-11-20 05:47:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 16:22:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 16:22:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 16:22:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 16:22:38 ERROR: BUSCO analysis failed!
2025-11-18 16:22:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 09:34:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 09:34:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:34:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 09:34:30 ERROR: BUSCO analysis failed!
2025-11-18 09:34:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:50:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:50:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:50:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:50:02 ERROR: BUSCO analysis failed!
2025-11-20 05:50:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:02:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:02:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:02:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:02:21 ERROR: BUSCO analysis failed!
2025-11-18 10:02:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:53:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:53:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:53:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:53:05 ERROR: BUSCO analysis failed!
2025-11-20 05:53:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 05:56:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 05:56:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:56:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 05:56:57 ERROR: BUSCO analysis failed!
2025-11-20 05:56:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 06:01:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 06:01:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:01:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:01:07 ERROR: BUSCO analysis failed!
2025-11-20 06:01:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:55:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:55:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:55:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:55:29 ERROR: BUSCO analysis failed!
2025-11-18 13:55:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:55:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:55:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:55:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:55:21 ERROR: BUSCO analysis failed!
2025-11-18 10:55:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:58:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:58:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:58:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:58:20 ERROR: BUSCO analysis failed!
2025-11-18 10:58:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:01:35 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:01:35 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:01:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:01:35 ERROR: BUSCO analysis failed!
2025-11-18 14:01:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 14:03:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 14:03:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:03:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 14:03:37 ERROR: BUSCO analysis failed!
2025-11-18 14:03:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 16:30:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 16:30:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 16:30:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 16:30:50 ERROR: BUSCO analysis failed!
2025-11-18 16:30:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:04:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:04:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:04:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:04:53 ERROR: BUSCO analysis failed!
2025-11-18 11:04:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:46:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:46:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:46:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:46:07 ERROR: BUSCO analysis failed!
2025-11-18 07:46:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:53:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:53:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:53:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:53:51 ERROR: BUSCO analysis failed!
2025-11-18 10:53:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:42:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:42:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:42:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:42:23 ERROR: BUSCO analysis failed!
2025-11-18 12:42:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 10:57:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 10:57:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:57:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 10:57:55 ERROR: BUSCO analysis failed!
2025-11-18 10:57:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:46:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:46:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:46:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:46:02 ERROR: BUSCO analysis failed!
2025-11-18 12:46:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:52:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:52:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:52:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:52:58 ERROR: BUSCO analysis failed!
2025-11-18 12:52:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 12:56:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 12:56:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:56:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 12:56:13 ERROR: BUSCO analysis failed!
2025-11-18 12:56:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:06:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:06:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:06:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:06:13 ERROR: BUSCO analysis failed!
2025-11-18 13:06:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:10:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:10:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:10:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:10:27 ERROR: BUSCO analysis failed!
2025-11-18 13:10:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:02:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:02:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:02:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:02:04 ERROR: BUSCO analysis failed!
2025-11-18 11:02:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:02:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:02:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:02:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:02:00 ERROR: BUSCO analysis failed!
2025-11-18 11:02:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:18:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:18:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:18:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:18:20 ERROR: BUSCO analysis failed!
2025-11-18 13:18:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:30:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:30:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:30:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:30:27 ERROR: BUSCO analysis failed!
2025-11-18 13:30:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:43:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:43:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:43:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:43:30 ERROR: BUSCO analysis failed!
2025-11-18 13:43:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 13:51:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 13:51:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:51:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 13:51:22 ERROR: BUSCO analysis failed!
2025-11-18 13:51:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 11:06:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 11:06:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:06:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 11:06:44 ERROR: BUSCO analysis failed!
2025-11-18 11:06:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 07:05:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 07:05:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:05:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 07:05:59 ERROR: BUSCO analysis failed!
2025-11-18 07:05:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 22:21:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 22:21:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 22:21:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 22:21:30 ERROR: BUSCO analysis failed!
2025-11-18 22:21:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-18 23:02:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-18 23:02:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 23:02:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-18 23:02:01 ERROR: BUSCO analysis failed!
2025-11-18 23:02:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | FATAL: exec /bin/bash failed: fork/exec /bin/bash: input/output error |
| 1 | 2025-11-19 05:30:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-19 05:30:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-19 05:30:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-19 05:30:15 ERROR: BUSCO analysis failed!
2025-11-19 05:30:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-19 05:53:12 ERROR: No genes were recognized by BUSCO. Please check the content oShow full stderr2025-11-19 05:53:12 ERROR: No genes were recognized by BUSCO. Please check the content of your input file.
2025-11-19 05:53:12 ERROR: BUSCO analysis failed!
2025-11-19 05:53:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-19 12:00:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-19 12:00:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-19 12:00:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-19 12:00:15 ERROR: BUSCO analysis failed!
2025-11-19 12:00:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-19 07:09:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-19 07:09:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-19 07:09:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-19 07:09:48 ERROR: BUSCO analysis failed!
2025-11-19 07:09:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-19 12:25:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-19 12:25:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-19 12:25:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-19 12:25:20 ERROR: BUSCO analysis failed!
2025-11-19 12:25:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-19 12:35:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-19 12:35:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-19 12:35:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-19 12:35:50 ERROR: BUSCO analysis failed!
2025-11-19 12:35:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-19 07:41:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-19 07:41:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/proteobacteria_odb10/refseq_db.faa.gz'
2025-11-19 07:41:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/proteobacteria_odb10/refseq_db.faa.gz'
2025-11-19 07:41:12 ERROR: BUSCO analysis failed!
2025-11-19 07:41:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /jetstream2/scratch/main/jobs-vgp/72684710/tool_script.sh: line 23: 77 Killed Show full stderr/jetstream2/scratch/main/jobs-vgp/72684710/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot |
| 1 | 2025-11-19 16:14:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-19 16:14:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-19 16:14:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-19 16:14:06 ERROR: BUSCO analysis failed!
2025-11-19 16:14:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /jetstream2/scratch/main/jobs-vgp/72689839/tool_script.sh: line 23: 77 Killed Show full stderr/jetstream2/scratch/main/jobs-vgp/72689839/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'eukaryota_odb10' --miniprot |
| 1 | /jetstream2/scratch/main/jobs-vgp/72690103/tool_script.sh: line 23: 77 Killed Show full stderr/jetstream2/scratch/main/jobs-vgp/72690103/tool_script.sh: line 23: 77 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'eukaryota_odb10' --miniprot |
| 1 | 2025-11-20 01:32:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 01:32:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 01:32:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 01:32:17 ERROR: BUSCO analysis failed!
2025-11-20 01:32:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-19 23:51:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-19 23:51:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-19 23:51:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-19 23:51:30 ERROR: BUSCO analysis failed!
2025-11-19 23:51:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 06:26:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 06:26:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:26:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:26:28 ERROR: BUSCO analysis failed!
2025-11-20 06:26:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 06:27:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 06:27:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:27:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:27:04 ERROR: BUSCO analysis failed!
2025-11-20 06:27:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 06:26:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 06:26:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:26:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:26:50 ERROR: BUSCO analysis failed!
2025-11-20 06:26:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 06:28:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 06:28:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:28:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:28:48 ERROR: BUSCO analysis failed!
2025-11-20 06:28:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 06:29:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 06:29:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:29:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:29:08 ERROR: BUSCO analysis failed!
2025-11-20 06:29:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 06:29:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 06:29:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:29:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:29:27 ERROR: BUSCO analysis failed!
2025-11-20 06:29:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 06:29:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 06:29:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:29:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:29:43 ERROR: BUSCO analysis failed!
2025-11-20 06:29:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 06:31:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 06:31:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:31:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:31:22 ERROR: BUSCO analysis failed!
2025-11-20 06:31:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 06:31:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 06:31:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:31:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 06:31:42 ERROR: BUSCO analysis failed!
2025-11-20 06:31:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 07:03:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 07:03:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 07:03:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 07:03:52 ERROR: BUSCO analysis failed!
2025-11-20 07:03:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 08:00:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 08:00:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz'
2025-11-20 08:00:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz'
2025-11-20 08:00:46 ERROR: BUSCO analysis failed!
2025-11-20 08:00:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 01:16:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 01:16:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 01:16:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 01:16:03 ERROR: BUSCO analysis failed!
2025-11-20 01:16:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 09:37:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 09:37:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz'
2025-11-20 09:37:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_class_odb10/refseq_db.faa.gz'
2025-11-20 09:37:03 ERROR: BUSCO analysis failed!
2025-11-20 09:37:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 01:44:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 01:44:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz'
2025-11-20 01:44:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz'
2025-11-20 01:44:45 ERROR: BUSCO analysis failed!
2025-11-20 01:44:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 09:45:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 09:45:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_phylum_odb10/refseq_db.faa.gz'
2025-11-20 09:45:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/actinobacteria_phylum_odb10/refseq_db.faa.gz'
2025-11-20 09:45:25 ERROR: BUSCO analysis failed!
2025-11-20 09:45:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 09:53:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 09:53:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 09:53:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 09:53:19 ERROR: BUSCO analysis failed!
2025-11-20 09:53:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 10:07:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 10:07:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 10:07:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 10:07:22 ERROR: BUSCO analysis failed!
2025-11-20 10:07:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 02:19:31 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-11-20 02:19:31 ERROR: The input file does not contain nucleotide sequences.
2025-11-20 02:19:31 ERROR: BUSCO analysis failed!
2025-11-20 02:19:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 03:41:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 03:41:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:41:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 03:41:08 ERROR: BUSCO analysis failed!
2025-11-20 03:41:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 11:48:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 11:48:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 11:48:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 11:48:47 ERROR: BUSCO analysis failed!
2025-11-20 11:48:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 11:55:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 11:55:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-20 11:55:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-20 11:55:57 ERROR: BUSCO analysis failed!
2025-11-20 11:55:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 11:56:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 11:56:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-20 11:56:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-20 11:56:27 ERROR: BUSCO analysis failed!
2025-11-20 11:56:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 04:00:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 04:00:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:00:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 04:00:48 ERROR: BUSCO analysis failed!
2025-11-20 04:00:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /jetstream2/scratch/main/jobs/72713223/tool_script.sh: line 23: 31 Killed Show full stderr/jetstream2/scratch/main/jobs/72713223/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot |
| 1 | 2025-11-20 08:26:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 08:26:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 08:26:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 08:26:47 ERROR: BUSCO analysis failed!
2025-11-20 08:26:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 11:16:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 11:16:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 11:16:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 11:16:34 ERROR: BUSCO analysis failed!
2025-11-20 11:16:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 11:16:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 11:16:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 11:16:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 11:16:33 ERROR: BUSCO analysis failed!
2025-11-20 11:16:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 11:28:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 11:28:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 11:28:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 11:28:29 ERROR: BUSCO analysis failed!
2025-11-20 11:28:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 15:14:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 15:14:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 15:14:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 15:14:36 ERROR: BUSCO analysis failed!
2025-11-20 15:14:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 12:28:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 12:28:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 12:28:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 12:28:46 ERROR: BUSCO analysis failed!
2025-11-20 12:28:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-20 12:28:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-20 12:28:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 12:28:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-20 12:28:48 ERROR: BUSCO analysis failed!
2025-11-20 12:28:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-21 06:05:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-21 06:05:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 06:05:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 06:05:13 ERROR: BUSCO analysis failed!
2025-11-21 06:05:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-21 04:33:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-21 04:33:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 04:33:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 04:33:24 ERROR: BUSCO analysis failed!
2025-11-21 04:33:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-21 07:43:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-21 07:43:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 07:43:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 07:43:22 ERROR: BUSCO analysis failed!
2025-11-21 07:43:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-21 04:48:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-21 04:48:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 04:48:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 04:48:01 ERROR: BUSCO analysis failed!
2025-11-21 04:48:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-21 18:52:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-21 18:52:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 18:52:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 18:52:06 ERROR: BUSCO analysis failed!
2025-11-21 18:52:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-21 21:46:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-21 21:46:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 21:46:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 21:46:07 ERROR: BUSCO analysis failed!
2025-11-21 21:46:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-21 21:50:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-21 21:50:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 21:50:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 21:50:07 ERROR: BUSCO analysis failed!
2025-11-21 21:50:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-21 17:04:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-21 17:04:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 17:04:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-21 17:04:25 ERROR: BUSCO analysis failed!
2025-11-21 17:04:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-21 17:12:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-21 17:12:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-21 17:12:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-11-21 17:12:27 ERROR: BUSCO analysis failed!
2025-11-21 17:12:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-21 14:28:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-21 14:28:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-11-21 14:28:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-11-21 14:28:04 ERROR: BUSCO analysis failed!
2025-11-21 14:28:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 01:45:57 ERROR: The character "/" is present in the fasta header >rnd-1_familyShow full stderr2025-11-22 01:45:57 ERROR: The character "/" is present in the fasta header >rnd-1_family-0#LINE/Tad1, which will crash Reader. Please clean the header of your input file.
2025-11-22 01:45:57 ERROR: BUSCO analysis failed!
2025-11-22 01:45:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 04:32:27 ERROR: The character "/" is present in the fasta header >rnd-1_familyShow full stderr2025-11-22 04:32:27 ERROR: The character "/" is present in the fasta header >rnd-1_family-0#LINE/Tad1, which will crash Reader. Please clean the header of your input file.
2025-11-22 04:32:27 ERROR: BUSCO analysis failed!
2025-11-22 04:32:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 15:34:20 ERROR: The character "/" is present in the fasta header >rnd-1_familyShow full stderr2025-11-22 15:34:20 ERROR: The character "/" is present in the fasta header >rnd-1_family-0#LINE/Tad1, which will crash Reader. Please clean the header of your input file.
2025-11-22 15:34:20 ERROR: BUSCO analysis failed!
2025-11-22 15:34:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 10:01:54 ERROR: The character "/" is present in the fasta header >rnd-1_familyShow full stderr2025-11-22 10:01:54 ERROR: The character "/" is present in the fasta header >rnd-1_family-0#LINE/Tad1, which will crash Reader. Please clean the header of your input file.
2025-11-22 10:01:54 ERROR: BUSCO analysis failed!
2025-11-22 10:01:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 22:15:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 22:15:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-22 22:15:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-11-22 22:15:56 ERROR: BUSCO analysis failed!
2025-11-22 22:15:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 17:26:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 17:26:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 17:26:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 17:26:10 ERROR: BUSCO analysis failed!
2025-11-22 17:26:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 22:13:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 22:13:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 22:13:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 22:13:54 ERROR: BUSCO analysis failed!
2025-11-22 22:13:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 01:57:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 01:57:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 01:57:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 01:57:43 ERROR: BUSCO analysis failed!
2025-11-23 01:57:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:01:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:01:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:01:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:01:27 ERROR: BUSCO analysis failed!
2025-11-23 02:01:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:02:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:02:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:02:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:02:16 ERROR: BUSCO analysis failed!
2025-11-23 02:02:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 22:59:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 22:59:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 22:59:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 22:59:33 ERROR: BUSCO analysis failed!
2025-11-22 22:59:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:04:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:04:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:04:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:04:40 ERROR: BUSCO analysis failed!
2025-11-23 07:04:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:06:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:06:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:06:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:06:59 ERROR: BUSCO analysis failed!
2025-11-22 23:06:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:09:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:09:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:09:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:09:33 ERROR: BUSCO analysis failed!
2025-11-22 23:09:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:09:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:09:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:09:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:09:44 ERROR: BUSCO analysis failed!
2025-11-22 23:09:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:17:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:17:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:17:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:17:33 ERROR: BUSCO analysis failed!
2025-11-22 23:17:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:33:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:33:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:33:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:33:20 ERROR: BUSCO analysis failed!
2025-11-22 23:33:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:35:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:35:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:35:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:35:29 ERROR: BUSCO analysis failed!
2025-11-22 23:35:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:38:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:38:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:38:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:38:14 ERROR: BUSCO analysis failed!
2025-11-22 23:38:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:45:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:45:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:45:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:45:37 ERROR: BUSCO analysis failed!
2025-11-22 23:45:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:47:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:47:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:47:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:47:21 ERROR: BUSCO analysis failed!
2025-11-22 23:47:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 01:57:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 01:57:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 01:57:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 01:57:46 ERROR: BUSCO analysis failed!
2025-11-23 01:57:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 22:59:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 22:59:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 22:59:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 22:59:29 ERROR: BUSCO analysis failed!
2025-11-22 22:59:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:04:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:04:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:04:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:04:44 ERROR: BUSCO analysis failed!
2025-11-22 23:04:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:12:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:12:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:12:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:12:18 ERROR: BUSCO analysis failed!
2025-11-22 23:12:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:14:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:14:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:14:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:14:45 ERROR: BUSCO analysis failed!
2025-11-22 23:14:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:20:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:20:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:20:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:20:09 ERROR: BUSCO analysis failed!
2025-11-23 02:20:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:33:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:33:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:33:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:33:03 ERROR: BUSCO analysis failed!
2025-11-22 23:33:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:40:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:40:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:40:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:40:30 ERROR: BUSCO analysis failed!
2025-11-22 23:40:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:42:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:42:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:42:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:42:12 ERROR: BUSCO analysis failed!
2025-11-22 23:42:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:46:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:46:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:46:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:46:42 ERROR: BUSCO analysis failed!
2025-11-23 07:46:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:48:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:48:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:48:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:48:02 ERROR: BUSCO analysis failed!
2025-11-22 23:48:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:49:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:49:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:49:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:49:42 ERROR: BUSCO analysis failed!
2025-11-22 23:49:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:52:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:52:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:52:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:52:21 ERROR: BUSCO analysis failed!
2025-11-22 23:52:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:54:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:54:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:54:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:54:51 ERROR: BUSCO analysis failed!
2025-11-22 23:54:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:14:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:14:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:14:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:14:58 ERROR: BUSCO analysis failed!
2025-11-23 03:14:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:07:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:07:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:07:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:07:45 ERROR: BUSCO analysis failed!
2025-11-23 00:07:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:02:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:02:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:02:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:02:10 ERROR: BUSCO analysis failed!
2025-11-22 23:02:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:04:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:04:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:04:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:04:30 ERROR: BUSCO analysis failed!
2025-11-22 23:04:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:12:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:12:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:12:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:12:04 ERROR: BUSCO analysis failed!
2025-11-22 23:12:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:14:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:14:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:14:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:14:34 ERROR: BUSCO analysis failed!
2025-11-22 23:14:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:15:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:15:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:15:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:15:06 ERROR: BUSCO analysis failed!
2025-11-22 23:15:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:20:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:20:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:20:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:20:06 ERROR: BUSCO analysis failed!
2025-11-22 23:20:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:28:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:28:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:28:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:28:22 ERROR: BUSCO analysis failed!
2025-11-22 23:28:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:22:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:22:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:22:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:22:45 ERROR: BUSCO analysis failed!
2025-11-22 23:22:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:30:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:30:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:30:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:30:50 ERROR: BUSCO analysis failed!
2025-11-22 23:30:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:35:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:35:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:35:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:35:46 ERROR: BUSCO analysis failed!
2025-11-22 23:35:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:37:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:37:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:37:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:37:59 ERROR: BUSCO analysis failed!
2025-11-22 23:37:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:42:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:42:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:42:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:42:58 ERROR: BUSCO analysis failed!
2025-11-22 23:42:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:50:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:50:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:50:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:50:41 ERROR: BUSCO analysis failed!
2025-11-22 23:50:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:58:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:58:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:58:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:58:05 ERROR: BUSCO analysis failed!
2025-11-22 23:58:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:59:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:59:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:59:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:59:51 ERROR: BUSCO analysis failed!
2025-11-22 23:59:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:00:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:00:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:00:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:00:41 ERROR: BUSCO analysis failed!
2025-11-23 00:00:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:02:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:02:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:02:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:02:06 ERROR: BUSCO analysis failed!
2025-11-22 23:02:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:10:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:10:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:10:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:10:40 ERROR: BUSCO analysis failed!
2025-11-23 02:10:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:07:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:07:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:07:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:07:16 ERROR: BUSCO analysis failed!
2025-11-22 23:07:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:17:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:17:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:17:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:17:13 ERROR: BUSCO analysis failed!
2025-11-22 23:17:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:22:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:22:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:22:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:22:49 ERROR: BUSCO analysis failed!
2025-11-23 02:22:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:20:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:20:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:20:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:20:07 ERROR: BUSCO analysis failed!
2025-11-22 23:20:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:22:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:22:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:22:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:22:34 ERROR: BUSCO analysis failed!
2025-11-22 23:22:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:25:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:25:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:25:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:25:29 ERROR: BUSCO analysis failed!
2025-11-22 23:25:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:30:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:30:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:30:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:30:36 ERROR: BUSCO analysis failed!
2025-11-22 23:30:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:44:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:44:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:44:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:44:50 ERROR: BUSCO analysis failed!
2025-11-22 23:44:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:57:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:57:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:57:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:57:20 ERROR: BUSCO analysis failed!
2025-11-22 23:57:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:27:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:27:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:27:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:27:33 ERROR: BUSCO analysis failed!
2025-11-23 03:27:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:15:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:15:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:15:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:15:29 ERROR: BUSCO analysis failed!
2025-11-23 00:15:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:17:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:17:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:17:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:17:59 ERROR: BUSCO analysis failed!
2025-11-23 00:17:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:18:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:18:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:18:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:18:19 ERROR: BUSCO analysis failed!
2025-11-23 00:18:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:20:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:20:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:20:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:20:29 ERROR: BUSCO analysis failed!
2025-11-23 00:20:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:52:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:52:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:52:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:52:25 ERROR: BUSCO analysis failed!
2025-11-22 23:52:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-22 23:55:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-22 23:55:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:55:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-22 23:55:13 ERROR: BUSCO analysis failed!
2025-11-22 23:55:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:02:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:02:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:02:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:02:51 ERROR: BUSCO analysis failed!
2025-11-23 03:02:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:10:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:10:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:10:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:10:49 ERROR: BUSCO analysis failed!
2025-11-23 00:10:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:31:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:31:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:31:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:31:00 ERROR: BUSCO analysis failed!
2025-11-23 00:31:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:33:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:33:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:33:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:33:33 ERROR: BUSCO analysis failed!
2025-11-23 00:33:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:08:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:08:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:08:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:08:19 ERROR: BUSCO analysis failed!
2025-11-23 00:08:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:12:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:12:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:12:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:12:45 ERROR: BUSCO analysis failed!
2025-11-23 00:12:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:13:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:13:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:13:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:13:19 ERROR: BUSCO analysis failed!
2025-11-23 00:13:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:36:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:36:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:36:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:36:00 ERROR: BUSCO analysis failed!
2025-11-23 00:36:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:38:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:38:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:38:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:38:34 ERROR: BUSCO analysis failed!
2025-11-23 00:38:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:02:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:02:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:02:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:02:49 ERROR: BUSCO analysis failed!
2025-11-23 00:02:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:03:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:03:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:03:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:03:19 ERROR: BUSCO analysis failed!
2025-11-23 00:03:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:05:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:05:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:05:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:05:17 ERROR: BUSCO analysis failed!
2025-11-23 00:05:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:05:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:05:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:05:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:05:50 ERROR: BUSCO analysis failed!
2025-11-23 00:05:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:10:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:10:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:10:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:10:17 ERROR: BUSCO analysis failed!
2025-11-23 00:10:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:23:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:23:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:23:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:23:59 ERROR: BUSCO analysis failed!
2025-11-23 03:23:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:15:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:15:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:15:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:15:48 ERROR: BUSCO analysis failed!
2025-11-23 00:15:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:23:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:23:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:23:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:23:06 ERROR: BUSCO analysis failed!
2025-11-23 00:23:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:23:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:23:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:23:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:23:21 ERROR: BUSCO analysis failed!
2025-11-23 00:23:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:25:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:25:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:25:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:25:47 ERROR: BUSCO analysis failed!
2025-11-23 00:25:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:39:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:39:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:39:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:39:49 ERROR: BUSCO analysis failed!
2025-11-23 03:39:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:20:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:20:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:20:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:20:51 ERROR: BUSCO analysis failed!
2025-11-23 00:20:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:31:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:31:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:31:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:31:20 ERROR: BUSCO analysis failed!
2025-11-23 00:31:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:33:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:33:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:33:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:33:53 ERROR: BUSCO analysis failed!
2025-11-23 00:33:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:36:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:36:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:36:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:36:19 ERROR: BUSCO analysis failed!
2025-11-23 00:36:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 00:38:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 00:38:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:38:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 00:38:45 ERROR: BUSCO analysis failed!
2025-11-23 00:38:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:06:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:06:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:06:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:06:09 ERROR: BUSCO analysis failed!
2025-11-23 02:06:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:06:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:06:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:06:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:06:07 ERROR: BUSCO analysis failed!
2025-11-23 02:06:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:37:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:37:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:37:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:37:22 ERROR: BUSCO analysis failed!
2025-11-23 02:37:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:40:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:40:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:40:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:40:02 ERROR: BUSCO analysis failed!
2025-11-23 02:40:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:18:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:18:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:18:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:18:38 ERROR: BUSCO analysis failed!
2025-11-23 02:18:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:20:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:20:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:20:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:20:43 ERROR: BUSCO analysis failed!
2025-11-23 02:20:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:44:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:44:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:44:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:44:42 ERROR: BUSCO analysis failed!
2025-11-23 02:44:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:48:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:48:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:48:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:48:24 ERROR: BUSCO analysis failed!
2025-11-23 02:48:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:08:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:08:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:08:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:08:04 ERROR: BUSCO analysis failed!
2025-11-23 02:08:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:20:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:20:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:20:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:20:52 ERROR: BUSCO analysis failed!
2025-11-23 02:20:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:20:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:20:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:20:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:20:41 ERROR: BUSCO analysis failed!
2025-11-23 02:20:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:23:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:23:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:23:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:23:28 ERROR: BUSCO analysis failed!
2025-11-23 02:23:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:26:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:26:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:26:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:26:10 ERROR: BUSCO analysis failed!
2025-11-23 02:26:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:27:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:27:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:27:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:27:00 ERROR: BUSCO analysis failed!
2025-11-23 02:27:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:27:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:27:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:27:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:27:02 ERROR: BUSCO analysis failed!
2025-11-23 02:27:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:31:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:31:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:31:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:31:22 ERROR: BUSCO analysis failed!
2025-11-23 02:31:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:39:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:39:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:39:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:39:23 ERROR: BUSCO analysis failed!
2025-11-23 02:39:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:42:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:42:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:42:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:42:03 ERROR: BUSCO analysis failed!
2025-11-23 02:42:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:39:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:39:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:39:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:39:05 ERROR: BUSCO analysis failed!
2025-11-23 07:39:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:14:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:14:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:14:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:14:54 ERROR: BUSCO analysis failed!
2025-11-23 02:14:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:15:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:15:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:15:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:15:50 ERROR: BUSCO analysis failed!
2025-11-23 02:15:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:12:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:12:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:12:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:12:25 ERROR: BUSCO analysis failed!
2025-11-23 02:12:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:12:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:12:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:12:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:12:23 ERROR: BUSCO analysis failed!
2025-11-23 02:12:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:18:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:18:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:18:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:18:12 ERROR: BUSCO analysis failed!
2025-11-23 02:18:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:28:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:28:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:28:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:28:34 ERROR: BUSCO analysis failed!
2025-11-23 02:28:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:16:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:16:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:16:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:16:29 ERROR: BUSCO analysis failed!
2025-11-23 02:16:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:16:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:16:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:16:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:16:26 ERROR: BUSCO analysis failed!
2025-11-23 02:16:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:16:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:16:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:16:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:16:27 ERROR: BUSCO analysis failed!
2025-11-23 02:16:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:29:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:29:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:29:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:29:13 ERROR: BUSCO analysis failed!
2025-11-23 02:29:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:34:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:34:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:34:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:34:43 ERROR: BUSCO analysis failed!
2025-11-23 02:34:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:42:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:42:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:42:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:42:42 ERROR: BUSCO analysis failed!
2025-11-23 02:42:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:25:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:25:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:25:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:25:50 ERROR: BUSCO analysis failed!
2025-11-23 02:25:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:31:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:31:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:31:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:31:56 ERROR: BUSCO analysis failed!
2025-11-23 02:31:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:33:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:33:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:33:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:33:59 ERROR: BUSCO analysis failed!
2025-11-23 02:33:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:36:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:36:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:36:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:36:41 ERROR: BUSCO analysis failed!
2025-11-23 02:36:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:54:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:54:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:54:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:54:51 ERROR: BUSCO analysis failed!
2025-11-23 02:54:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:00:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:00:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:00:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:00:37 ERROR: BUSCO analysis failed!
2025-11-23 03:00:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:03:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:03:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:03:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:03:13 ERROR: BUSCO analysis failed!
2025-11-23 03:03:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:36:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:36:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:36:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:36:37 ERROR: BUSCO analysis failed!
2025-11-23 07:36:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:46:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:46:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:46:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:46:24 ERROR: BUSCO analysis failed!
2025-11-23 07:46:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:05:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:05:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:05:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:05:32 ERROR: BUSCO analysis failed!
2025-11-23 03:05:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:41:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:41:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:41:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:41:45 ERROR: BUSCO analysis failed!
2025-11-23 02:41:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:45:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:45:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:45:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:45:23 ERROR: BUSCO analysis failed!
2025-11-23 02:45:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:43:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:43:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:43:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:43:52 ERROR: BUSCO analysis failed!
2025-11-23 02:43:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:43:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:43:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:43:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:43:49 ERROR: BUSCO analysis failed!
2025-11-23 02:43:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:44:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:44:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:44:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:44:16 ERROR: BUSCO analysis failed!
2025-11-23 07:44:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:30:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:30:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:30:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:30:20 ERROR: BUSCO analysis failed!
2025-11-23 03:30:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:48:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:48:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:48:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:48:11 ERROR: BUSCO analysis failed!
2025-11-23 02:48:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:48:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:48:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:48:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:48:43 ERROR: BUSCO analysis failed!
2025-11-23 07:48:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:48:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:48:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:48:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:48:57 ERROR: BUSCO analysis failed!
2025-11-23 02:48:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:36:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:36:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:36:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:36:59 ERROR: BUSCO analysis failed!
2025-11-23 07:36:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:08:35 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:08:35 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:08:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:08:35 ERROR: BUSCO analysis failed!
2025-11-23 03:08:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:41:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:41:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:41:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:41:42 ERROR: BUSCO analysis failed!
2025-11-23 07:41:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:18:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:18:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:18:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:18:36 ERROR: BUSCO analysis failed!
2025-11-23 03:18:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:21:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:21:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:21:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:21:24 ERROR: BUSCO analysis failed!
2025-11-23 03:21:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:46:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:46:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:46:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:46:09 ERROR: BUSCO analysis failed!
2025-11-23 07:46:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:36:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:36:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:36:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:36:07 ERROR: BUSCO analysis failed!
2025-11-23 03:36:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:38:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:38:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:38:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:38:50 ERROR: BUSCO analysis failed!
2025-11-23 03:38:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:49:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:49:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:49:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:49:00 ERROR: BUSCO analysis failed!
2025-11-23 07:49:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:49:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:49:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:49:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:49:14 ERROR: BUSCO analysis failed!
2025-11-23 07:49:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:53:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:53:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:53:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:53:07 ERROR: BUSCO analysis failed!
2025-11-23 07:53:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:52:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:52:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:52:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:52:02 ERROR: BUSCO analysis failed!
2025-11-23 02:52:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:54:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:54:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:54:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:54:33 ERROR: BUSCO analysis failed!
2025-11-23 02:54:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:34:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:34:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:34:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:34:13 ERROR: BUSCO analysis failed!
2025-11-23 07:34:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:35:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:35:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:35:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:35:38 ERROR: BUSCO analysis failed!
2025-11-23 07:35:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:37:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:37:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:37:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:37:54 ERROR: BUSCO analysis failed!
2025-11-23 07:37:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:00:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:00:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:00:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:00:15 ERROR: BUSCO analysis failed!
2025-11-23 03:00:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:44:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:44:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:44:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:44:13 ERROR: BUSCO analysis failed!
2025-11-23 07:44:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:11:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:11:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:11:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:11:14 ERROR: BUSCO analysis failed!
2025-11-23 03:11:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:54:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:54:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:54:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:54:32 ERROR: BUSCO analysis failed!
2025-11-23 07:54:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:54:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:54:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:54:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:54:53 ERROR: BUSCO analysis failed!
2025-11-23 07:54:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:05:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:05:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:05:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:05:51 ERROR: BUSCO analysis failed!
2025-11-23 03:05:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:57:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:57:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:57:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:57:34 ERROR: BUSCO analysis failed!
2025-11-23 07:57:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:00:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:00:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:00:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:00:45 ERROR: BUSCO analysis failed!
2025-11-23 03:00:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:00:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:00:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:00:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:00:44 ERROR: BUSCO analysis failed!
2025-11-23 03:00:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:33:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:33:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:33:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:33:26 ERROR: BUSCO analysis failed!
2025-11-23 03:33:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 02:56:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 02:56:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:56:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 02:56:34 ERROR: BUSCO analysis failed!
2025-11-23 02:56:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:55:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:55:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:55:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:55:44 ERROR: BUSCO analysis failed!
2025-11-23 07:55:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:58:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:58:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:58:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:58:17 ERROR: BUSCO analysis failed!
2025-11-23 07:58:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:13:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:13:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:13:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:13:45 ERROR: BUSCO analysis failed!
2025-11-23 08:13:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:15:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:15:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:15:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:15:19 ERROR: BUSCO analysis failed!
2025-11-23 03:15:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:30:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:30:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:30:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:30:00 ERROR: BUSCO analysis failed!
2025-11-23 08:30:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:30:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:30:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:30:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:30:05 ERROR: BUSCO analysis failed!
2025-11-23 08:30:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:51:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:51:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:51:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:51:33 ERROR: BUSCO analysis failed!
2025-11-23 07:51:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:15:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:15:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:15:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:15:38 ERROR: BUSCO analysis failed!
2025-11-23 08:15:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:32:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:32:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:32:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:32:47 ERROR: BUSCO analysis failed!
2025-11-23 08:32:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:32:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:32:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:32:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:32:50 ERROR: BUSCO analysis failed!
2025-11-23 08:32:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:34:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:34:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:34:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:34:20 ERROR: BUSCO analysis failed!
2025-11-23 03:34:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:36:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:36:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:36:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:36:07 ERROR: BUSCO analysis failed!
2025-11-23 08:36:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:36:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:36:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:36:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:36:51 ERROR: BUSCO analysis failed!
2025-11-23 08:36:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 07:57:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 07:57:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:57:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 07:57:00 ERROR: BUSCO analysis failed!
2025-11-23 07:57:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 03:09:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 03:09:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:09:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 03:09:10 ERROR: BUSCO analysis failed!
2025-11-23 03:09:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:33:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:33:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:33:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:33:23 ERROR: BUSCO analysis failed!
2025-11-23 08:33:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:35:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:35:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:35:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:35:45 ERROR: BUSCO analysis failed!
2025-11-23 08:35:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:35:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:35:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:35:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:35:48 ERROR: BUSCO analysis failed!
2025-11-23 08:35:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:38:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:38:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:38:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:38:30 ERROR: BUSCO analysis failed!
2025-11-23 08:38:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:25:35 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:25:35 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:25:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:25:35 ERROR: BUSCO analysis failed!
2025-11-23 08:25:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:39:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:39:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:39:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:39:30 ERROR: BUSCO analysis failed!
2025-11-23 08:39:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 08:38:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 08:38:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:38:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 08:38:45 ERROR: BUSCO analysis failed!
2025-11-23 08:38:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 12:19:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 12:19:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 12:19:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 12:19:55 ERROR: BUSCO analysis failed!
2025-11-23 12:19:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 12:56:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 12:56:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-23 12:56:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-23 12:56:51 ERROR: BUSCO analysis failed!
2025-11-23 12:56:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 13:02:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 13:02:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 13:02:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 13:02:42 ERROR: BUSCO analysis failed!
2025-11-23 13:02:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 13:09:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 13:09:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 13:09:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 13:09:26 ERROR: BUSCO analysis failed!
2025-11-23 13:09:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 18:10:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 18:10:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 18:10:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 18:10:08 ERROR: BUSCO analysis failed!
2025-11-23 18:10:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 18:17:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 18:17:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 18:17:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 18:17:09 ERROR: BUSCO analysis failed!
2025-11-23 18:17:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 15:20:26 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-11-23 15:20:26 ERROR: The input file does not contain nucleotide sequences.
2025-11-23 15:20:26 ERROR: BUSCO analysis failed!
2025-11-23 15:20:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:02:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:02:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:02:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:02:36 ERROR: BUSCO analysis failed!
2025-11-24 03:02:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-23 19:30:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-23 19:30:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 19:30:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-23 19:30:02 ERROR: BUSCO analysis failed!
2025-11-23 19:30:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:19:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:19:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:19:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:19:24 ERROR: BUSCO analysis failed!
2025-11-24 02:19:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:23:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:23:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:23:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:23:13 ERROR: BUSCO analysis failed!
2025-11-24 02:23:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:42:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:42:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:42:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:42:59 ERROR: BUSCO analysis failed!
2025-11-24 02:42:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:46:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:46:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:46:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:46:36 ERROR: BUSCO analysis failed!
2025-11-24 02:46:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:55:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:55:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:55:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:55:00 ERROR: BUSCO analysis failed!
2025-11-24 02:55:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:58:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:58:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:58:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:58:44 ERROR: BUSCO analysis failed!
2025-11-24 02:58:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:06:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:06:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:06:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:06:06 ERROR: BUSCO analysis failed!
2025-11-24 03:06:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:19:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:19:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:19:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:19:15 ERROR: BUSCO analysis failed!
2025-11-24 03:19:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:32:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:32:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:32:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:32:58 ERROR: BUSCO analysis failed!
2025-11-24 03:32:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:45:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:45:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:45:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:45:12 ERROR: BUSCO analysis failed!
2025-11-24 03:45:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:48:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:48:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:48:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:48:48 ERROR: BUSCO analysis failed!
2025-11-24 03:48:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:55:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:55:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:55:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:55:25 ERROR: BUSCO analysis failed!
2025-11-24 03:55:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:58:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:58:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:58:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:58:10 ERROR: BUSCO analysis failed!
2025-11-24 03:58:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:27:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:27:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:27:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:27:39 ERROR: BUSCO analysis failed!
2025-11-24 04:27:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:40:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:40:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:40:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:40:29 ERROR: BUSCO analysis failed!
2025-11-24 04:40:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:43:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:43:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:43:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:43:15 ERROR: BUSCO analysis failed!
2025-11-24 04:43:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:23:31 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:23:31 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:23:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:23:31 ERROR: BUSCO analysis failed!
2025-11-24 02:23:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:37:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:37:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:37:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:37:38 ERROR: BUSCO analysis failed!
2025-11-24 02:37:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:08:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:08:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:08:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:08:49 ERROR: BUSCO analysis failed!
2025-11-24 03:08:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:38:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:38:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:38:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:38:25 ERROR: BUSCO analysis failed!
2025-11-24 03:38:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:41:31 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:41:31 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:41:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:41:31 ERROR: BUSCO analysis failed!
2025-11-24 03:41:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:51:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:51:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:51:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:51:28 ERROR: BUSCO analysis failed!
2025-11-24 03:51:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:04:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:04:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:04:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:04:18 ERROR: BUSCO analysis failed!
2025-11-24 04:04:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:07:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:07:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:07:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:07:16 ERROR: BUSCO analysis failed!
2025-11-24 04:07:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:13:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:13:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:13:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:13:22 ERROR: BUSCO analysis failed!
2025-11-24 04:13:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:34:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:34:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:34:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:34:40 ERROR: BUSCO analysis failed!
2025-11-24 04:34:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:37:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:37:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:37:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:37:23 ERROR: BUSCO analysis failed!
2025-11-24 04:37:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:47:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:47:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:47:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:47:14 ERROR: BUSCO analysis failed!
2025-11-24 04:47:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:54:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:54:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:54:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:54:00 ERROR: BUSCO analysis failed!
2025-11-24 04:54:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:56:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:56:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:56:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:56:55 ERROR: BUSCO analysis failed!
2025-11-24 04:56:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 05:00:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 05:00:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 05:00:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 05:00:30 ERROR: BUSCO analysis failed!
2025-11-24 05:00:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 05:04:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 05:04:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 05:04:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 05:04:11 ERROR: BUSCO analysis failed!
2025-11-24 05:04:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:33:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:33:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:33:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:33:42 ERROR: BUSCO analysis failed!
2025-11-24 02:33:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:49:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:49:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:49:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:49:19 ERROR: BUSCO analysis failed!
2025-11-24 02:49:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:57:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:57:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:57:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:57:48 ERROR: BUSCO analysis failed!
2025-11-24 02:57:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:02:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:02:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:02:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:02:22 ERROR: BUSCO analysis failed!
2025-11-24 03:02:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:12:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:12:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:12:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:12:26 ERROR: BUSCO analysis failed!
2025-11-24 03:12:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:16:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:16:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:16:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:16:18 ERROR: BUSCO analysis failed!
2025-11-24 03:16:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:30:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:30:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:30:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:30:24 ERROR: BUSCO analysis failed!
2025-11-24 03:30:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:35:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:35:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:35:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:35:47 ERROR: BUSCO analysis failed!
2025-11-24 03:35:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:01:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:01:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:01:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:01:30 ERROR: BUSCO analysis failed!
2025-11-24 04:01:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:09:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:09:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:09:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:09:57 ERROR: BUSCO analysis failed!
2025-11-24 04:09:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:16:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:16:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:16:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:16:55 ERROR: BUSCO analysis failed!
2025-11-24 04:16:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:19:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:19:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:19:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:19:41 ERROR: BUSCO analysis failed!
2025-11-24 04:19:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:23:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:23:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:23:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:23:37 ERROR: BUSCO analysis failed!
2025-11-24 04:23:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:31:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:31:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:31:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:31:05 ERROR: BUSCO analysis failed!
2025-11-24 04:31:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:35:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:35:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:35:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:35:07 ERROR: BUSCO analysis failed!
2025-11-24 04:35:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:50:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:50:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:50:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:50:03 ERROR: BUSCO analysis failed!
2025-11-24 04:50:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:30:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:30:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:30:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:30:33 ERROR: BUSCO analysis failed!
2025-11-24 02:30:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:40:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:40:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:40:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:40:19 ERROR: BUSCO analysis failed!
2025-11-24 02:40:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:52:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 02:52:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:52:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 02:52:10 ERROR: BUSCO analysis failed!
2025-11-24 02:52:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:21:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:21:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:21:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:21:57 ERROR: BUSCO analysis failed!
2025-11-24 03:21:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:24:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:24:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:24:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:24:34 ERROR: BUSCO analysis failed!
2025-11-24 03:24:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 03:27:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 03:27:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:27:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 03:27:29 ERROR: BUSCO analysis failed!
2025-11-24 03:27:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 02:30:07 ERROR: The character "/" is present in the fasta header >TE_00000000#Show full stderr2025-11-24 02:30:07 ERROR: The character "/" is present in the fasta header >TE_00000000#DNA/DTC, which will crash Reader. Please clean the header of your input file.
2025-11-24 02:30:07 ERROR: BUSCO analysis failed!
2025-11-24 02:30:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 06:36:30 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-11-24 06:36:30 ERROR: The input file does not contain nucleotide sequences.
2025-11-24 06:36:30 ERROR: BUSCO analysis failed!
2025-11-24 06:36:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 06:58:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 06:58:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 06:58:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 06:58:40 ERROR: BUSCO analysis failed!
2025-11-24 06:58:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 04:08:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 04:08:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:08:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 04:08:37 ERROR: BUSCO analysis failed!
2025-11-24 04:08:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 09:10:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 09:10:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:10:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:10:48 ERROR: BUSCO analysis failed!
2025-11-24 09:10:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:12:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:12:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:12:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:12:34 ERROR: BUSCO analysis failed!
2025-11-24 10:12:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:22:23 ERROR: Please provide a protein file as inputShow full stderr2025-11-24 10:22:23 ERROR: Please provide a protein file as input
2025-11-24 10:22:23 ERROR: BUSCO analysis failed!
2025-11-24 10:22:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 07:27:43 ERROR: Please provide a protein file as inputShow full stderr2025-11-24 07:27:43 ERROR: Please provide a protein file as input
2025-11-24 07:27:43 ERROR: BUSCO analysis failed!
2025-11-24 07:27:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /ocean/projects/mcb140028p/xcgalaxy/main/staging/72829629/tool_script.sh: line 23: 45 KillShow full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72829629/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'nematoda_odb10' --miniprot |
| 1 | 2025-11-24 08:16:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 08:16:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 08:16:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 08:16:20 ERROR: BUSCO analysis failed!
2025-11-24 08:16:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 12:41:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 12:41:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 12:41:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 12:41:59 ERROR: BUSCO analysis failed!
2025-11-24 12:41:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 09:46:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 09:46:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:46:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:46:24 ERROR: BUSCO analysis failed!
2025-11-24 09:46:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:18:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:18:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:18:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:18:41 ERROR: BUSCO analysis failed!
2025-11-24 10:18:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:25:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:25:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:25:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:25:07 ERROR: BUSCO analysis failed!
2025-11-24 10:25:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 13:26:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 13:26:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 13:26:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 13:26:32 ERROR: BUSCO analysis failed!
2025-11-24 13:26:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:38:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:38:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:38:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:38:32 ERROR: BUSCO analysis failed!
2025-11-24 10:38:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 13:57:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 13:57:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 13:57:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 13:57:25 ERROR: BUSCO analysis failed!
2025-11-24 13:57:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:03:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:03:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:03:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:03:16 ERROR: BUSCO analysis failed!
2025-11-24 11:03:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:09:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:09:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:09:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:09:28 ERROR: BUSCO analysis failed!
2025-11-24 11:09:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:09:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:09:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:09:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:09:53 ERROR: BUSCO analysis failed!
2025-11-24 11:09:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 12:42:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 12:42:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 12:42:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 12:42:01 ERROR: BUSCO analysis failed!
2025-11-24 12:42:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:25:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:25:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:25:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:25:09 ERROR: BUSCO analysis failed!
2025-11-24 10:25:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 13:39:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 13:39:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 13:39:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 13:39:29 ERROR: BUSCO analysis failed!
2025-11-24 13:39:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:44:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:44:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:44:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:44:54 ERROR: BUSCO analysis failed!
2025-11-24 10:44:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:51:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:51:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:51:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:51:02 ERROR: BUSCO analysis failed!
2025-11-24 10:51:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:16:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:16:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:16:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:16:19 ERROR: BUSCO analysis failed!
2025-11-24 11:16:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:16:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:16:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:16:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:16:39 ERROR: BUSCO analysis failed!
2025-11-24 11:16:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:29:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:29:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:29:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:29:50 ERROR: BUSCO analysis failed!
2025-11-24 11:29:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 14:31:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 14:31:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 14:31:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 14:31:12 ERROR: BUSCO analysis failed!
2025-11-24 14:31:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:05:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:05:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:05:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:05:51 ERROR: BUSCO analysis failed!
2025-11-24 10:05:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:05:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:05:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:05:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:05:50 ERROR: BUSCO analysis failed!
2025-11-24 10:05:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:38:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:38:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:38:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:38:08 ERROR: BUSCO analysis failed!
2025-11-24 10:38:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:50:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:50:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:50:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:50:34 ERROR: BUSCO analysis failed!
2025-11-24 10:50:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:03:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:03:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:03:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:03:37 ERROR: BUSCO analysis failed!
2025-11-24 11:03:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:22:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:22:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:22:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:22:46 ERROR: BUSCO analysis failed!
2025-11-24 11:22:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:29:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:29:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:29:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:29:17 ERROR: BUSCO analysis failed!
2025-11-24 11:29:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 14:30:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 14:30:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 14:30:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 14:30:25 ERROR: BUSCO analysis failed!
2025-11-24 14:30:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:35:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:35:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:35:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:35:36 ERROR: BUSCO analysis failed!
2025-11-24 11:35:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:36:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:36:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:36:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:36:05 ERROR: BUSCO analysis failed!
2025-11-24 11:36:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:42:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:42:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:42:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:42:22 ERROR: BUSCO analysis failed!
2025-11-24 11:42:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:50:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:50:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:50:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:50:08 ERROR: BUSCO analysis failed!
2025-11-24 11:50:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:55:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:55:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:55:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:55:53 ERROR: BUSCO analysis failed!
2025-11-24 11:55:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:56:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:56:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:56:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:56:27 ERROR: BUSCO analysis failed!
2025-11-24 11:56:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 09:46:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 09:46:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:46:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:46:25 ERROR: BUSCO analysis failed!
2025-11-24 09:46:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 09:59:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 09:59:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:59:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:59:22 ERROR: BUSCO analysis failed!
2025-11-24 09:59:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 09:59:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 09:59:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:59:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 09:59:21 ERROR: BUSCO analysis failed!
2025-11-24 09:59:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:18:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:18:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:18:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:18:39 ERROR: BUSCO analysis failed!
2025-11-24 10:18:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:44:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:44:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:44:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:44:23 ERROR: BUSCO analysis failed!
2025-11-24 10:44:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:56:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:56:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:56:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:56:56 ERROR: BUSCO analysis failed!
2025-11-24 10:56:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 10:57:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 10:57:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:57:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 10:57:15 ERROR: BUSCO analysis failed!
2025-11-24 10:57:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:16:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:16:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:16:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:16:34 ERROR: BUSCO analysis failed!
2025-11-24 11:16:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:41:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:41:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:41:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:41:51 ERROR: BUSCO analysis failed!
2025-11-24 11:41:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:49:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:49:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:49:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:49:15 ERROR: BUSCO analysis failed!
2025-11-24 11:49:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 11:22:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 11:22:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:22:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 11:22:51 ERROR: BUSCO analysis failed!
2025-11-24 11:22:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 13:35:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 13:35:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-24 13:35:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-24 13:35:01 ERROR: BUSCO analysis failed!
2025-11-24 13:35:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 18:50:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 18:50:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-24 18:50:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-24 18:50:17 ERROR: BUSCO analysis failed!
2025-11-24 18:50:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 12:34:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 12:34:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-24 12:34:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-24 12:34:47 ERROR: BUSCO analysis failed!
2025-11-24 12:34:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 15:37:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 15:37:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-24 15:37:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-24 15:37:32 ERROR: BUSCO analysis failed!
2025-11-24 15:37:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 05:30:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 05:30:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 05:30:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 05:30:30 ERROR: BUSCO analysis failed!
2025-11-25 05:30:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 21:30:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 21:30:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-24 21:30:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-24 21:30:39 ERROR: BUSCO analysis failed!
2025-11-24 21:30:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-24 22:05:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-24 22:05:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 22:05:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-24 22:05:06 ERROR: BUSCO analysis failed!
2025-11-24 22:05:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72853602/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72853602/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot |
| 1 | 2025-11-25 01:18:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 01:18:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 01:18:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 01:18:25 ERROR: BUSCO analysis failed!
2025-11-25 01:18:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 01:45:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 01:45:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-25 01:45:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-25 01:45:41 ERROR: BUSCO analysis failed!
2025-11-25 01:45:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /jetstream2/scratch/main/jobs/72856041/tool_script.sh: line 23: 31 Killed Show full stderr/jetstream2/scratch/main/jobs/72856041/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot |
| 1 | 2025-11-25 04:35:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 04:35:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 04:35:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 04:35:36 ERROR: BUSCO analysis failed!
2025-11-25 04:35:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 04:35:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 04:35:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 04:35:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 04:35:34 ERROR: BUSCO analysis failed!
2025-11-25 04:35:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 09:34:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 09:34:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 09:34:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 09:34:30 ERROR: BUSCO analysis failed!
2025-11-25 09:34:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 01:35:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 01:35:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 01:35:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 01:35:20 ERROR: BUSCO analysis failed!
2025-11-25 01:35:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 01:35:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 01:35:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 01:35:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 01:35:13 ERROR: BUSCO analysis failed!
2025-11-25 01:35:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 04:35:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 04:35:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 04:35:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-11-25 04:35:49 ERROR: BUSCO analysis failed!
2025-11-25 04:35:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 05:15:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 05:15:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-25 05:15:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-25 05:15:42 ERROR: BUSCO analysis failed!
2025-11-25 05:15:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 05:22:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 05:22:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-25 05:22:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-25 05:22:30 ERROR: BUSCO analysis failed!
2025-11-25 05:22:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 10:56:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 10:56:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-25 10:56:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-25 10:56:18 ERROR: BUSCO analysis failed!
2025-11-25 10:56:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 11:08:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-25 11:08:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-25 11:08:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-25 11:08:00 ERROR: BUSCO analysis failed!
2025-11-25 11:08:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 14:41:17 ERROR: Duplicate of sequence >Sim in input fileShow full stderr2025-11-25 14:41:17 ERROR: Duplicate of sequence >Sim in input file
2025-11-25 14:41:17 ERROR: BUSCO analysis failed!
2025-11-25 14:41:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 14:40:38 ERROR: Duplicate of sequence >Sim in input fileShow full stderr2025-11-25 14:40:38 ERROR: Duplicate of sequence >Sim in input file
2025-11-25 14:40:38 ERROR: BUSCO analysis failed!
2025-11-25 14:40:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-25 14:40:56 ERROR: Duplicate of sequence >Sim in input fileShow full stderr2025-11-25 14:40:56 ERROR: Duplicate of sequence >Sim in input file
2025-11-25 14:40:56 ERROR: BUSCO analysis failed!
2025-11-25 14:40:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-26 01:56:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-26 01:56:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-26 01:56:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-26 01:56:30 ERROR: BUSCO analysis failed!
2025-11-26 01:56:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-26 09:23:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-26 09:23:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-26 09:23:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-26 09:23:16 ERROR: BUSCO analysis failed!
2025-11-26 09:23:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-26 09:38:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-26 09:38:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-26 09:38:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-26 09:38:32 ERROR: BUSCO analysis failed!
2025-11-26 09:38:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-26 13:52:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-26 13:52:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-26 13:52:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-26 13:52:46 ERROR: BUSCO analysis failed!
2025-11-26 13:52:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-26 18:51:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-26 18:51:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-26 18:51:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-26 18:51:56 ERROR: BUSCO analysis failed!
2025-11-26 18:51:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-26 14:05:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-26 14:05:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-26 14:05:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-26 14:05:28 ERROR: BUSCO analysis failed!
2025-11-26 14:05:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-26 14:15:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-26 14:15:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-26 14:15:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-26 14:15:01 ERROR: BUSCO analysis failed!
2025-11-26 14:15:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-26 14:15:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-26 14:15:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-26 14:15:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-26 14:15:28 ERROR: BUSCO analysis failed!
2025-11-26 14:15:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-26 20:09:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-26 20:09:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-26 20:09:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-26 20:09:20 ERROR: BUSCO analysis failed!
2025-11-26 20:09:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 09:46:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 09:46:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 09:46:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 09:46:09 ERROR: BUSCO analysis failed!
2025-11-27 09:46:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 09:46:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 09:46:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 09:46:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 09:46:29 ERROR: BUSCO analysis failed!
2025-11-27 09:46:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 04:57:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 04:57:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 04:57:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 04:57:19 ERROR: BUSCO analysis failed!
2025-11-27 04:57:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 06:13:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 06:13:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-27 06:13:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-11-27 06:13:58 ERROR: BUSCO analysis failed!
2025-11-27 06:13:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:22:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:22:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-27 11:22:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-27 11:22:29 ERROR: BUSCO analysis failed!
2025-11-27 11:22:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 06:46:35 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 06:46:35 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-27 06:46:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-27 06:46:35 ERROR: BUSCO analysis failed!
2025-11-27 06:46:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 12:55:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 12:55:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-27 12:55:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-11-27 12:55:02 ERROR: BUSCO analysis failed!
2025-11-27 12:55:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 15:35:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 15:35:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 15:35:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 15:35:02 ERROR: BUSCO analysis failed!
2025-11-27 15:35:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 15:41:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 15:41:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 15:41:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 15:41:21 ERROR: BUSCO analysis failed!
2025-11-27 15:41:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 15:43:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 15:43:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 15:43:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 15:43:50 ERROR: BUSCO analysis failed!
2025-11-27 15:43:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 10:38:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 10:38:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 10:38:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 10:38:39 ERROR: BUSCO analysis failed!
2025-11-27 10:38:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 07:47:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 07:47:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 07:47:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 07:47:27 ERROR: BUSCO analysis failed!
2025-11-27 07:47:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:05:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:05:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:05:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:05:33 ERROR: BUSCO analysis failed!
2025-11-27 11:05:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 08:08:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 08:08:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 08:08:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 08:08:15 ERROR: BUSCO analysis failed!
2025-11-27 08:08:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 16:18:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 16:18:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:18:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:18:37 ERROR: BUSCO analysis failed!
2025-11-27 16:18:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:22:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:22:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:22:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:22:41 ERROR: BUSCO analysis failed!
2025-11-27 11:22:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:26:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:26:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:26:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:26:21 ERROR: BUSCO analysis failed!
2025-11-27 11:26:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:30:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:30:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:30:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:30:45 ERROR: BUSCO analysis failed!
2025-11-27 11:30:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 16:42:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 16:42:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:42:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:42:23 ERROR: BUSCO analysis failed!
2025-11-27 16:42:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 16:45:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 16:45:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:45:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:45:11 ERROR: BUSCO analysis failed!
2025-11-27 16:45:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 16:53:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 16:53:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:53:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:53:37 ERROR: BUSCO analysis failed!
2025-11-27 16:53:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 16:59:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 16:59:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:59:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:59:23 ERROR: BUSCO analysis failed!
2025-11-27 16:59:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 09:02:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 09:02:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 09:02:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 09:02:34 ERROR: BUSCO analysis failed!
2025-11-27 09:02:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 17:05:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 17:05:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 17:05:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 17:05:23 ERROR: BUSCO analysis failed!
2025-11-27 17:05:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 09:08:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 09:08:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 09:08:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 09:08:21 ERROR: BUSCO analysis failed!
2025-11-27 09:08:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 17:10:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 17:10:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 17:10:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 17:10:53 ERROR: BUSCO analysis failed!
2025-11-27 17:10:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 07:50:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 07:50:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 07:50:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 07:50:08 ERROR: BUSCO analysis failed!
2025-11-27 07:50:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 07:52:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 07:52:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 07:52:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 07:52:46 ERROR: BUSCO analysis failed!
2025-11-27 07:52:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 15:55:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 15:55:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 15:55:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 15:55:34 ERROR: BUSCO analysis failed!
2025-11-27 15:55:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 10:59:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 10:59:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 10:59:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 10:59:28 ERROR: BUSCO analysis failed!
2025-11-27 10:59:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:02:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:02:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:02:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:02:05 ERROR: BUSCO analysis failed!
2025-11-27 11:02:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:11:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:11:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:11:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:11:51 ERROR: BUSCO analysis failed!
2025-11-27 11:11:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:15:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:15:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:15:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:15:58 ERROR: BUSCO analysis failed!
2025-11-27 11:15:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:33:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:33:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:33:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:33:15 ERROR: BUSCO analysis failed!
2025-11-27 11:33:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:37:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:37:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:37:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:37:09 ERROR: BUSCO analysis failed!
2025-11-27 11:37:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:39:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:39:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:39:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:39:56 ERROR: BUSCO analysis failed!
2025-11-27 11:39:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:48:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:48:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:48:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:48:33 ERROR: BUSCO analysis failed!
2025-11-27 11:48:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 16:51:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 16:51:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:51:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 16:51:01 ERROR: BUSCO analysis failed!
2025-11-27 16:51:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 11:56:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 11:56:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:56:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 11:56:59 ERROR: BUSCO analysis failed!
2025-11-27 11:56:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-27 09:14:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-27 09:14:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 09:14:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-27 09:14:59 ERROR: BUSCO analysis failed!
2025-11-27 09:14:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | CRITICAL: Unhandled exception occurred:Show full stderrCRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/run_BUSCO.py", line 180, in run_BUSCO
config_manager.load_busco_config(sys.argv)
File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/BuscoLogger.py", line 55, in wrapped_func
self.retval = func(*args, **kwargs)
File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/ConfigManager.py", line 47, in load_busco_config
self.config.validate()
File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/BuscoConfig.py", line 248, in validate
self._init_downloader()
File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/BuscoConfig.py", line 49, in _init_downloader
self.downloader = BuscoDownloadManager(self)
File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/BuscoDownloadManager.py", line 49, in __init__
self._load_versions()
File "/cvmfs/main.galaxyproject.org/deps/_conda/envs/mulled-v1-0f680480858d2f5838e57feebce6473a9e8f1903a83fbd0c2d1ec3561b77db2d/lib/python3.9/site-packages/busco/BuscoDownloadManager.py", line 59, in _load_versions
with open(versions_file, "r") as v_file:
FileNotFoundError: [Errno 2] No such file or directory: '/jetstream2/scratch/main/jobs/72927930/working/busco_downloads/file_versions.tsv' |
| 1 | ERROR: Prodigal did not recognize any genes matching the dataset proteobacteria_odb10 in Show full stderrERROR: Prodigal did not recognize any genes matching the dataset proteobacteria_odb10 in the input file. If this is unexpected, check your input file and your installation of Prodigal
ERROR: BUSCO analysis failed !
ERROR: Check the logs, read the user guide, and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72939711/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72939711/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'mammalia_odb10' --miniprot |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72939716/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72939716/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'mammalia_odb10' --miniprot |
| 1 | 2025-11-28 05:01:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-28 05:01:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-28 05:01:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-28 05:01:40 ERROR: BUSCO analysis failed!
2025-11-28 05:01:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /ocean/projects/mcb140028p/xcgalaxy/main/staging/72946291/tool_script.sh: line 23: 45 KillShow full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72946291/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'metazoa_odb10' --miniprot |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72946308/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72946308/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'mollusca_odb10' --miniprot |
| 1 | 2025-11-28 16:32:35 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-28 16:32:35 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-28 16:32:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-28 16:32:35 ERROR: BUSCO analysis failed!
2025-11-28 16:32:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-28 18:34:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-28 18:34:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-28 18:34:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-28 18:34:51 ERROR: BUSCO analysis failed!
2025-11-28 18:34:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-28 13:42:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-28 13:42:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-28 13:42:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-28 13:42:26 ERROR: BUSCO analysis failed!
2025-11-28 13:42:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /ocean/projects/mcb140028p/xcgalaxy/main/staging/72953711/tool_script.sh: line 23: 45 KillShow full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72953711/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'ascomycota_odb10' --miniprot |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72953992/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/72953992/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'ascomycota_odb10' --miniprot |
| 1 | /jetstream2/scratch/main/jobs/72954118/tool_script.sh: line 23: 31 Killed Show full stderr/jetstream2/scratch/main/jobs/72954118/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'ascomycota_odb10' --miniprot |
| 1 | /anvil/scratch/x-xcgalaxy/main/staging/72955511/tool_script.sh: line 23: 48 Killed Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/72955511/tool_script.sh: line 23: 48 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'metazoa_odb10' --miniprot |
| 1 | /ocean/projects/mcb140028p/xcgalaxy/main/staging/72955512/tool_script.sh: line 23: 45 KillShow full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/72955512/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'mollusca_odb10' --miniprot |
| 1 | 2025-11-29 10:02:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-29 10:02:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-29 10:02:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-29 10:02:01 ERROR: BUSCO analysis failed!
2025-11-29 10:02:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-29 15:24:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-29 15:24:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/campylobacterales_odb10/refseq_db.faa.gz'
2025-11-29 15:24:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/campylobacterales_odb10/refseq_db.faa.gz'
2025-11-29 15:24:14 ERROR: BUSCO analysis failed!
2025-11-29 15:24:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-30 07:32:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-30 07:32:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 07:32:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 07:32:11 ERROR: BUSCO analysis failed!
2025-11-30 07:32:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-30 07:32:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-30 07:32:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 07:32:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 07:32:26 ERROR: BUSCO analysis failed!
2025-11-30 07:32:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-30 04:31:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-30 04:31:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 04:31:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 04:31:51 ERROR: BUSCO analysis failed!
2025-11-30 04:31:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-30 04:46:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-30 04:46:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 04:46:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 04:46:57 ERROR: BUSCO analysis failed!
2025-11-30 04:46:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-30 21:36:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-30 21:36:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 21:36:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 21:36:57 ERROR: BUSCO analysis failed!
2025-11-30 21:36:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-11-30 21:51:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-11-30 21:51:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 21:51:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-11-30 21:51:58 ERROR: BUSCO analysis failed!
2025-11-30 21:51:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 06:13:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 06:13:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 06:13:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 06:13:59 ERROR: BUSCO analysis failed!
2025-12-01 06:13:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 06:14:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 06:14:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 06:14:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 06:14:09 ERROR: BUSCO analysis failed!
2025-12-01 06:14:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 11:46:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 11:46:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 11:46:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 11:46:43 ERROR: BUSCO analysis failed!
2025-12-01 11:46:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 16:24:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 16:24:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 16:24:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 16:24:33 ERROR: BUSCO analysis failed!
2025-12-01 16:24:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 16:48:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 16:48:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 16:48:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 16:48:52 ERROR: BUSCO analysis failed!
2025-12-01 16:48:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 11:49:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 11:49:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 11:49:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 11:49:29 ERROR: BUSCO analysis failed!
2025-12-01 11:49:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 08:49:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 08:49:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 08:49:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 08:49:16 ERROR: BUSCO analysis failed!
2025-12-01 08:49:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 11:52:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 11:52:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 11:52:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 11:52:20 ERROR: BUSCO analysis failed!
2025-12-01 11:52:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 11:52:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 11:52:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 11:52:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 11:52:21 ERROR: BUSCO analysis failed!
2025-12-01 11:52:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 11:55:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 11:55:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 11:55:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 11:55:58 ERROR: BUSCO analysis failed!
2025-12-01 11:55:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 09:08:18 ERROR: Please provide a protein file as inputShow full stderr2025-12-01 09:08:18 ERROR: Please provide a protein file as input
2025-12-01 09:08:18 ERROR: BUSCO analysis failed!
2025-12-01 09:08:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 12:09:22 ERROR: Please provide a protein file as inputShow full stderr2025-12-01 12:09:22 ERROR: Please provide a protein file as input
2025-12-01 12:09:22 ERROR: BUSCO analysis failed!
2025-12-01 12:09:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 12:09:14 ERROR: Please provide a protein file as inputShow full stderr2025-12-01 12:09:14 ERROR: Please provide a protein file as input
2025-12-01 12:09:14 ERROR: BUSCO analysis failed!
2025-12-01 12:09:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 18:21:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 18:21:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 18:21:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 18:21:28 ERROR: BUSCO analysis failed!
2025-12-01 18:21:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 13:23:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 13:23:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 13:23:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 13:23:04 ERROR: BUSCO analysis failed!
2025-12-01 13:23:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 10:22:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 10:22:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 10:22:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 10:22:09 ERROR: BUSCO analysis failed!
2025-12-01 10:22:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 18:21:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 18:21:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 18:21:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 18:21:54 ERROR: BUSCO analysis failed!
2025-12-01 18:21:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 18:22:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 18:22:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 18:22:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 18:22:12 ERROR: BUSCO analysis failed!
2025-12-01 18:22:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 18:50:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 18:50:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 18:50:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 18:50:55 ERROR: BUSCO analysis failed!
2025-12-01 18:50:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-01 18:51:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-01 18:51:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 18:51:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-01 18:51:21 ERROR: BUSCO analysis failed!
2025-12-01 18:51:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 01:51:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 01:51:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 01:51:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 01:51:36 ERROR: BUSCO analysis failed!
2025-12-02 01:51:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 07:16:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 07:16:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 07:16:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 07:16:41 ERROR: BUSCO analysis failed!
2025-12-02 07:16:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 02:27:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 02:27:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 02:27:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 02:27:59 ERROR: BUSCO analysis failed!
2025-12-02 02:27:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 07:44:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 07:44:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 07:44:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 07:44:10 ERROR: BUSCO analysis failed!
2025-12-02 07:44:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 02:47:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 02:47:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 02:47:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 02:47:19 ERROR: BUSCO analysis failed!
2025-12-02 02:47:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 08:34:07 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-12-02 08:34:07 ERROR: The input file does not contain nucleotide sequences.
2025-12-02 08:34:07 ERROR: BUSCO analysis failed!
2025-12-02 08:34:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 05:16:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 05:16:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 05:16:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 05:16:21 ERROR: BUSCO analysis failed!
2025-12-02 05:16:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 12:58:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 12:58:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 12:58:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 12:58:38 ERROR: BUSCO analysis failed!
2025-12-02 12:58:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 10:31:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 10:31:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz'
2025-12-02 10:31:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz'
2025-12-02 10:31:19 ERROR: BUSCO analysis failed!
2025-12-02 10:31:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 10:31:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 10:31:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz'
2025-12-02 10:31:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz'
2025-12-02 10:31:18 ERROR: BUSCO analysis failed!
2025-12-02 10:31:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 15:26:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 15:26:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz'
2025-12-02 15:26:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/acidobacteria_odb10/refseq_db.faa.gz'
2025-12-02 15:26:51 ERROR: BUSCO analysis failed!
2025-12-02 15:26:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 14:12:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 14:12:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 14:12:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 14:12:33 ERROR: BUSCO analysis failed!
2025-12-02 14:12:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 14:27:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 14:27:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 14:27:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 14:27:51 ERROR: BUSCO analysis failed!
2025-12-02 14:27:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 15:11:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 15:11:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 15:11:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 15:11:47 ERROR: BUSCO analysis failed!
2025-12-02 15:11:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 12:10:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 12:10:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 12:10:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 12:10:26 ERROR: BUSCO analysis failed!
2025-12-02 12:10:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 12:21:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 12:21:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 12:21:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 12:21:02 ERROR: BUSCO analysis failed!
2025-12-02 12:21:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 12:31:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 12:31:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-02 12:31:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-02 12:31:15 ERROR: BUSCO analysis failed!
2025-12-02 12:31:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 15:54:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 15:54:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 15:54:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 15:54:02 ERROR: BUSCO analysis failed!
2025-12-02 15:54:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-02 17:30:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-02 17:30:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 17:30:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-02 17:30:33 ERROR: BUSCO analysis failed!
2025-12-02 17:30:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 00:53:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 00:53:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 00:53:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 00:53:55 ERROR: BUSCO analysis failed!
2025-12-03 00:53:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 04:12:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 04:12:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 04:12:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 04:12:21 ERROR: BUSCO analysis failed!
2025-12-03 04:12:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 01:33:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 01:33:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 01:33:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 01:33:15 ERROR: BUSCO analysis failed!
2025-12-03 01:33:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 04:42:46 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-12-03 04:42:46 ERROR: The input file does not contain nucleotide sequences.
2025-12-03 04:42:46 ERROR: BUSCO analysis failed!
2025-12-03 04:42:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 05:58:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 05:58:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 05:58:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 05:58:00 ERROR: BUSCO analysis failed!
2025-12-03 05:58:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 08:11:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 08:11:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 08:11:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 08:11:33 ERROR: BUSCO analysis failed!
2025-12-03 08:11:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 09:21:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 09:21:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 09:21:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 09:21:23 ERROR: BUSCO analysis failed!
2025-12-03 09:21:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 12:47:05 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-12-03 12:47:05 ERROR: The input file does not contain nucleotide sequences.
2025-12-03 12:47:05 ERROR: BUSCO analysis failed!
2025-12-03 12:47:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 21:19:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 21:19:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/vibrionales_odb10/refseq_db.faa.gz'
2025-12-03 21:19:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/vibrionales_odb10/refseq_db.faa.gz'
2025-12-03 21:19:13 ERROR: BUSCO analysis failed!
2025-12-03 21:19:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-03 21:31:46 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-03 21:31:46 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 21:31:46 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-03 21:31:46 ERROR: BUSCO analysis failed!
2025-12-03 21:31:46 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 05:37:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 05:37:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 05:37:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 05:37:00 ERROR: BUSCO analysis failed!
2025-12-04 05:37:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-12 22:22:40 ERROR: Metaeuk did not recognize any genes matching the dataset tetraShow full stderr2025-12-12 22:22:40 ERROR: Metaeuk did not recognize any genes matching the dataset tetrapoda_odb10 in the input file. If this is unexpected, check your input file and your installation of Metaeuk
2025-12-12 22:22:40 ERROR: BUSCO analysis failed!
2025-12-12 22:22:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 05:53:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 05:53:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 05:53:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 05:53:21 ERROR: BUSCO analysis failed!
2025-12-04 05:53:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 05:55:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 05:55:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 05:55:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 05:55:42 ERROR: BUSCO analysis failed!
2025-12-04 05:55:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 02:52:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 02:52:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 02:52:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 02:52:40 ERROR: BUSCO analysis failed!
2025-12-04 02:52:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 05:09:03 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-12-04 05:09:03 ERROR: The input file does not contain nucleotide sequences.
2025-12-04 05:09:03 ERROR: BUSCO analysis failed!
2025-12-04 05:09:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 08:09:47 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-12-04 08:09:47 ERROR: The input file does not contain nucleotide sequences.
2025-12-04 08:09:47 ERROR: BUSCO analysis failed!
2025-12-04 08:09:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 06:20:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 06:20:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 06:20:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 06:20:37 ERROR: BUSCO analysis failed!
2025-12-04 06:20:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 06:24:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 06:24:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 06:24:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 06:24:39 ERROR: BUSCO analysis failed!
2025-12-04 06:24:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 03:20:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 03:20:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 03:20:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 03:20:43 ERROR: BUSCO analysis failed!
2025-12-04 03:20:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 06:23:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 06:23:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 06:23:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 06:23:08 ERROR: BUSCO analysis failed!
2025-12-04 06:23:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 06:22:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 06:22:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 06:22:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 06:22:10 ERROR: BUSCO analysis failed!
2025-12-04 06:22:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 06:27:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 06:27:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 06:27:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 06:27:43 ERROR: BUSCO analysis failed!
2025-12-04 06:27:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 06:31:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 06:31:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-04 06:31:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-04 06:31:19 ERROR: BUSCO analysis failed!
2025-12-04 06:31:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 06:30:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 06:30:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-04 06:30:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-04 06:30:13 ERROR: BUSCO analysis failed!
2025-12-04 06:30:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 06:33:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 06:33:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-04 06:33:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-04 06:33:12 ERROR: BUSCO analysis failed!
2025-12-04 06:33:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 06:33:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 06:33:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz'
2025-12-04 06:33:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/streptomycetales_odb10/refseq_db.faa.gz'
2025-12-04 06:33:13 ERROR: BUSCO analysis failed!
2025-12-04 06:33:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 06:50:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 06:50:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-04 06:50:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-04 06:50:38 ERROR: BUSCO analysis failed!
2025-12-04 06:50:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 08:26:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 08:26:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-12-04 08:26:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-12-04 08:26:39 ERROR: BUSCO analysis failed!
2025-12-04 08:26:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 08:51:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 08:51:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 08:51:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 08:51:41 ERROR: BUSCO analysis failed!
2025-12-04 08:51:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 08:56:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 08:56:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 08:56:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 08:56:16 ERROR: BUSCO analysis failed!
2025-12-04 08:56:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 09:03:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 09:03:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 09:03:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 09:03:47 ERROR: BUSCO analysis failed!
2025-12-04 09:03:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 09:12:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 09:12:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-12-04 09:12:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/pseudomonadales_odb10/refseq_db.faa.gz'
2025-12-04 09:12:48 ERROR: BUSCO analysis failed!
2025-12-04 09:12:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 10:18:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 10:18:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 10:18:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 10:18:49 ERROR: BUSCO analysis failed!
2025-12-04 10:18:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 17:40:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 17:40:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 17:40:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 17:40:00 ERROR: BUSCO analysis failed!
2025-12-04 17:40:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-04 22:56:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-04 22:56:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 22:56:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-04 22:56:30 ERROR: BUSCO analysis failed!
2025-12-04 22:56:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 01:23:44 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 01:23:44 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 01:23:44 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 01:23:44 ERROR: BUSCO analysis failed!
2025-12-05 01:23:44 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 01:43:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 01:43:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 01:43:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 01:43:10 ERROR: BUSCO analysis failed!
2025-12-05 01:43:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 07:11:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 07:11:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 07:11:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 07:11:17 ERROR: BUSCO analysis failed!
2025-12-05 07:11:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 04:51:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 04:51:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 04:51:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 04:51:52 ERROR: BUSCO analysis failed!
2025-12-05 04:51:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 07:53:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 07:53:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 07:53:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 07:53:39 ERROR: BUSCO analysis failed!
2025-12-05 07:53:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 07:53:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 07:53:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 07:53:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 07:53:13 ERROR: BUSCO analysis failed!
2025-12-05 07:53:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 07:53:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 07:53:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 07:53:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 07:53:16 ERROR: BUSCO analysis failed!
2025-12-05 07:53:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 07:56:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 07:56:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 07:56:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 07:56:20 ERROR: BUSCO analysis failed!
2025-12-05 07:56:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /dev/stdin: line 118: /tmp/tmp.TAqI1GAuur/cmd1: No such file or directoryShow full stderr/dev/stdin: line 118: /tmp/tmp.TAqI1GAuur/cmd1: No such file or directory
/dev/stdin: line 6: $CVMFSEXEC_CMDFD: ambiguous redirect
/dev/stdin: line 11: /tmp/tmp.TAqI1GAuur/wait2: No such file or directory
/dev/stdin: line 14: CVMFSEXEC_CMDFD: ambiguous redirect
[91mERROR : Failed to create user namespace: not allowed to create user namespace
[0m |
| 1 | 2025-12-05 09:20:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 09:20:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 09:20:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 09:20:15 ERROR: BUSCO analysis failed!
2025-12-05 09:20:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 19:52:54 ERROR: Please provide a protein file as inputShow full stderr2025-12-05 19:52:54 ERROR: Please provide a protein file as input
2025-12-05 19:52:54 ERROR: BUSCO analysis failed!
2025-12-05 19:52:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 15:31:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 15:31:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 15:31:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 15:31:06 ERROR: BUSCO analysis failed!
2025-12-05 15:31:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 15:33:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 15:33:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 15:33:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 15:33:30 ERROR: BUSCO analysis failed!
2025-12-05 15:33:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 15:40:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 15:40:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 15:40:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 15:40:34 ERROR: BUSCO analysis failed!
2025-12-05 15:40:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 15:56:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 15:56:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 15:56:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 15:56:24 ERROR: BUSCO analysis failed!
2025-12-05 15:56:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-05 16:34:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-05 16:34:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 16:34:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-05 16:34:27 ERROR: BUSCO analysis failed!
2025-12-05 16:34:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-06 06:48:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-06 06:48:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-06 06:48:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-06 06:48:19 ERROR: BUSCO analysis failed!
2025-12-06 06:48:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-06 04:17:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-06 04:17:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-06 04:17:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-06 04:17:30 ERROR: BUSCO analysis failed!
2025-12-06 04:17:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-06 15:02:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-06 15:02:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-06 15:02:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-06 15:02:56 ERROR: BUSCO analysis failed!
2025-12-06 15:02:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-06 18:19:49 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-12-06 18:19:49 ERROR: The input file does not contain nucleotide sequences.
2025-12-06 18:19:49 ERROR: BUSCO analysis failed!
2025-12-06 18:19:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-06 21:12:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-06 21:12:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-06 21:12:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-06 21:12:34 ERROR: BUSCO analysis failed!
2025-12-06 21:12:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-06 21:12:35 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-06 21:12:35 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-06 21:12:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-06 21:12:35 ERROR: BUSCO analysis failed!
2025-12-06 21:12:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-07 00:11:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-07 00:11:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 00:11:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 00:11:00 ERROR: BUSCO analysis failed!
2025-12-07 00:11:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-07 07:16:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-07 07:16:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-07 07:16:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-07 07:16:54 ERROR: BUSCO analysis failed!
2025-12-07 07:16:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-07 11:24:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-07 11:24:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 11:24:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 11:24:25 ERROR: BUSCO analysis failed!
2025-12-07 11:24:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-07 11:25:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-07 11:25:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 11:25:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 11:25:15 ERROR: BUSCO analysis failed!
2025-12-07 11:25:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-07 11:59:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-07 11:59:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 11:59:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 11:59:22 ERROR: BUSCO analysis failed!
2025-12-07 11:59:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-07 12:37:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-07 12:37:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 12:37:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 12:37:42 ERROR: BUSCO analysis failed!
2025-12-07 12:37:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-07 12:37:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-07 12:37:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 12:37:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 12:37:47 ERROR: BUSCO analysis failed!
2025-12-07 12:37:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-07 12:38:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-07 12:38:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 12:38:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-07 12:38:54 ERROR: BUSCO analysis failed!
2025-12-07 12:38:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-07 13:36:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-07 13:36:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-07 13:36:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-07 13:36:27 ERROR: BUSCO analysis failed!
2025-12-07 13:36:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-07 21:45:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-07 21:45:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-07 21:45:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-07 21:45:55 ERROR: BUSCO analysis failed!
2025-12-07 21:45:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 07:15:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 07:15:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:15:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:15:33 ERROR: BUSCO analysis failed!
2025-12-08 07:15:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 07:15:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 07:15:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:15:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:15:32 ERROR: BUSCO analysis failed!
2025-12-08 07:15:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 07:18:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 07:18:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:18:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:18:25 ERROR: BUSCO analysis failed!
2025-12-08 07:18:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 07:16:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 07:16:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:16:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:16:05 ERROR: BUSCO analysis failed!
2025-12-08 07:16:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 07:19:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 07:19:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:19:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:19:19 ERROR: BUSCO analysis failed!
2025-12-08 07:19:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 07:21:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 07:21:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:21:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:21:24 ERROR: BUSCO analysis failed!
2025-12-08 07:21:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 07:30:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 07:30:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:30:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:30:57 ERROR: BUSCO analysis failed!
2025-12-08 07:30:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 07:52:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 07:52:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:52:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:52:29 ERROR: BUSCO analysis failed!
2025-12-08 07:52:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 07:55:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 07:55:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:55:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 07:55:34 ERROR: BUSCO analysis failed!
2025-12-08 07:55:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 08:07:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 08:07:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:07:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:07:26 ERROR: BUSCO analysis failed!
2025-12-08 08:07:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 08:11:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 08:11:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:11:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:11:24 ERROR: BUSCO analysis failed!
2025-12-08 08:11:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 08:08:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 08:08:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:08:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:08:27 ERROR: BUSCO analysis failed!
2025-12-08 08:08:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 08:12:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 08:12:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:12:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:12:28 ERROR: BUSCO analysis failed!
2025-12-08 08:12:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 05:10:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 05:10:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 05:10:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 05:10:30 ERROR: BUSCO analysis failed!
2025-12-08 05:10:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 10:59:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 10:59:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 10:59:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 10:59:49 ERROR: BUSCO analysis failed!
2025-12-08 10:59:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 08:00:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 08:00:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:00:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:00:57 ERROR: BUSCO analysis failed!
2025-12-08 08:00:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 08:08:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 08:08:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:08:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 08:08:11 ERROR: BUSCO analysis failed!
2025-12-08 08:08:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 11:12:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 11:12:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 11:12:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 11:12:17 ERROR: BUSCO analysis failed!
2025-12-08 11:12:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 11:18:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 11:18:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 11:18:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 11:18:29 ERROR: BUSCO analysis failed!
2025-12-08 11:18:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 11:35:14 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 11:35:14 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 11:35:14 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 11:35:14 ERROR: BUSCO analysis failed!
2025-12-08 11:35:14 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 11:53:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 11:53:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 11:53:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 11:53:23 ERROR: BUSCO analysis failed!
2025-12-08 11:53:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 14:34:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 14:34:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 14:34:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 14:34:38 ERROR: BUSCO analysis failed!
2025-12-08 14:34:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-08 15:39:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-08 15:39:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 15:39:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-08 15:39:18 ERROR: BUSCO analysis failed!
2025-12-08 15:39:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73189466/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73189466/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot |
| 1 | 2025-12-09 05:15:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 05:15:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 05:15:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 05:15:10 ERROR: BUSCO analysis failed!
2025-12-09 05:15:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-09 02:41:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 02:41:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-09 02:41:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-09 02:41:15 ERROR: BUSCO analysis failed!
2025-12-09 02:41:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-09 05:51:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 05:51:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-09 05:51:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-09 05:51:00 ERROR: BUSCO analysis failed!
2025-12-09 05:51:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-09 10:15:55 ERROR: Augustus did not recognize any genes matching the dataset actiShow full stderr2025-12-09 10:15:55 ERROR: Augustus did not recognize any genes matching the dataset actinopterygii_odb10 in the input file. If this is unexpected, check your input file and your installation of Augustus
2025-12-09 10:15:55 ERROR: BUSCO analysis failed!
2025-12-09 10:15:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-09 07:43:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 07:43:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 07:43:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 07:43:41 ERROR: BUSCO analysis failed!
2025-12-09 07:43:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-09 10:55:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 10:55:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-09 10:55:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-09 10:55:16 ERROR: BUSCO analysis failed!
2025-12-09 10:55:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-09 10:56:03 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 10:56:03 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-09 10:56:03 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-09 10:56:03 ERROR: BUSCO analysis failed!
2025-12-09 10:56:03 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-09 10:55:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 10:55:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-09 10:55:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-09 10:55:11 ERROR: BUSCO analysis failed!
2025-12-09 10:55:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-09 10:55:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 10:55:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-09 10:55:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-09 10:55:10 ERROR: BUSCO analysis failed!
2025-12-09 10:55:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-09 12:55:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 12:55:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 12:55:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 12:55:09 ERROR: BUSCO analysis failed!
2025-12-09 12:55:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-09 09:57:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 09:57:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 09:57:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 09:57:37 ERROR: BUSCO analysis failed!
2025-12-09 09:57:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-09 12:18:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-09 12:18:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 12:18:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-09 12:18:12 ERROR: BUSCO analysis failed!
2025-12-09 12:18:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 00:48:57 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 00:48:57 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:48:57 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:48:57 ERROR: BUSCO analysis failed!
2025-12-10 00:48:57 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 00:48:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 00:48:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:48:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:48:54 ERROR: BUSCO analysis failed!
2025-12-10 00:48:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 03:55:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 03:55:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 03:55:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 03:55:23 ERROR: BUSCO analysis failed!
2025-12-10 03:55:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 00:54:00 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 00:54:00 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:54:00 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:54:00 ERROR: BUSCO analysis failed!
2025-12-10 00:54:00 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 00:56:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 00:56:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:56:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:56:51 ERROR: BUSCO analysis failed!
2025-12-10 00:56:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:07:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:07:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:07:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:07:30 ERROR: BUSCO analysis failed!
2025-12-10 01:07:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:10:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:10:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:10:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:10:06 ERROR: BUSCO analysis failed!
2025-12-10 01:10:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:18:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:18:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:18:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:18:51 ERROR: BUSCO analysis failed!
2025-12-10 01:18:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:21:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:21:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:21:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:21:26 ERROR: BUSCO analysis failed!
2025-12-10 01:21:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:21:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:21:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:21:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:21:54 ERROR: BUSCO analysis failed!
2025-12-10 01:21:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:24:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:24:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:24:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:24:17 ERROR: BUSCO analysis failed!
2025-12-10 01:24:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:39:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:39:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:39:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:39:56 ERROR: BUSCO analysis failed!
2025-12-10 01:39:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 04:59:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 04:59:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 04:59:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 04:59:02 ERROR: BUSCO analysis failed!
2025-12-10 04:59:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 02:09:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 02:09:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:09:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:09:02 ERROR: BUSCO analysis failed!
2025-12-10 02:09:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 02:12:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 02:12:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:12:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:12:11 ERROR: BUSCO analysis failed!
2025-12-10 02:12:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 02:14:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 02:14:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:14:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:14:20 ERROR: BUSCO analysis failed!
2025-12-10 02:14:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 00:54:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 00:54:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:54:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:54:12 ERROR: BUSCO analysis failed!
2025-12-10 00:54:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 00:59:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 00:59:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:59:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:59:23 ERROR: BUSCO analysis failed!
2025-12-10 00:59:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 00:59:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 00:59:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:59:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:59:38 ERROR: BUSCO analysis failed!
2025-12-10 00:59:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:02:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:02:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:02:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:02:11 ERROR: BUSCO analysis failed!
2025-12-10 01:02:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:04:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:04:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:04:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:04:59 ERROR: BUSCO analysis failed!
2025-12-10 01:04:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:10:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:10:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:10:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:10:02 ERROR: BUSCO analysis failed!
2025-12-10 01:10:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 04:26:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 04:26:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 04:26:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 04:26:07 ERROR: BUSCO analysis failed!
2025-12-10 04:26:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:27:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:27:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:27:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:27:16 ERROR: BUSCO analysis failed!
2025-12-10 01:27:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:42:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:42:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:42:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:42:13 ERROR: BUSCO analysis failed!
2025-12-10 01:42:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:50:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:50:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:50:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:50:09 ERROR: BUSCO analysis failed!
2025-12-10 01:50:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:52:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:52:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:52:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:52:55 ERROR: BUSCO analysis failed!
2025-12-10 01:52:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 02:00:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 02:00:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:00:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:00:55 ERROR: BUSCO analysis failed!
2025-12-10 02:00:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 02:04:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 02:04:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:04:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:04:26 ERROR: BUSCO analysis failed!
2025-12-10 02:04:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 02:07:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 02:07:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:07:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:07:08 ERROR: BUSCO analysis failed!
2025-12-10 02:07:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 02:09:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 02:09:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:09:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:09:41 ERROR: BUSCO analysis failed!
2025-12-10 02:09:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 02:11:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 02:11:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:11:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 02:11:43 ERROR: BUSCO analysis failed!
2025-12-10 02:11:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 00:51:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 00:51:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:51:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:51:24 ERROR: BUSCO analysis failed!
2025-12-10 00:51:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 00:51:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 00:51:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:51:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:51:39 ERROR: BUSCO analysis failed!
2025-12-10 00:51:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 00:56:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 00:56:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:56:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 00:56:39 ERROR: BUSCO analysis failed!
2025-12-10 00:56:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:02:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:02:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:02:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:02:05 ERROR: BUSCO analysis failed!
2025-12-10 01:02:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:04:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:04:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:04:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:04:45 ERROR: BUSCO analysis failed!
2025-12-10 01:04:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:07:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:07:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:07:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:07:24 ERROR: BUSCO analysis failed!
2025-12-10 01:07:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:12:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:12:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:12:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:12:45 ERROR: BUSCO analysis failed!
2025-12-10 01:12:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:15:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:15:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:15:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:15:22 ERROR: BUSCO analysis failed!
2025-12-10 01:15:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 01:29:58 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 01:29:58 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:29:58 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 01:29:58 ERROR: BUSCO analysis failed!
2025-12-10 01:29:58 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | Traceback (most recent call last):Show full stderrTraceback (most recent call last):
File "/usr/local/bin/busco", line 54, in <module>
run_BUSCO.main()
File "/usr/local/lib/python3.10/site-packages/busco/run_BUSCO.py", line 497, in main
busco_run.run()
File "/usr/local/lib/python3.10/site-packages/busco/run_BUSCO.py", line 68, in run
self.load_config()
File "/usr/local/lib/python3.10/site-packages/busco/run_BUSCO.py", line 60, in load_config
self.config_manager.load_busco_config_main()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/ConfigManager.py", line 63, in load_busco_config_main
self.config_main.validate()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoConfig.py", line 648, in validate
self._init_downloader()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoConfig.py", line 448, in _init_downloader
self.downloader = BuscoDownloadManager(self)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoDownloadManager.py", line 50, in __init__
self._create_main_download_dir()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoDownloadManager.py", line 68, in _create_main_download_dir
os.makedirs(self.local_download_path, exist_ok=True)
File "/usr/local/lib/python3.10/os.py", line 215, in makedirs
makedirs(head, exist_ok=exist_ok)
File "/usr/local/lib/python3.10/os.py", line 215, in makedirs
makedirs(head, exist_ok=exist_ok)
File "/usr/local/lib/python3.10/os.py", line 225, in makedirs
mkdir(name, mode)
OSError: [Errno 30] Read-only file system: '/cvmfs/data.galaxyproject.org/byhand' |
| 1 | 2025-12-10 09:56:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 09:56:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-10 09:56:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-10 09:56:23 ERROR: BUSCO analysis failed!
2025-12-10 09:56:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 08:28:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 08:28:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 08:28:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 08:28:26 ERROR: BUSCO analysis failed!
2025-12-10 08:28:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 11:39:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 11:39:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz'
2025-12-10 11:39:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz'
2025-12-10 11:39:38 ERROR: BUSCO analysis failed!
2025-12-10 11:39:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 12:50:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 12:50:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-10 12:50:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-10 12:50:04 ERROR: BUSCO analysis failed!
2025-12-10 12:50:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 14:27:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 14:27:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 14:27:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 14:27:06 ERROR: BUSCO analysis failed!
2025-12-10 14:27:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 14:29:53 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-12-10 14:29:53 ERROR: The input file does not contain nucleotide sequences.
2025-12-10 14:29:53 ERROR: BUSCO analysis failed!
2025-12-10 14:29:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 14:43:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 14:43:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/mollicutes_odb10/refseq_db.faa.gz'
2025-12-10 14:43:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/mollicutes_odb10/refseq_db.faa.gz'
2025-12-10 14:43:40 ERROR: BUSCO analysis failed!
2025-12-10 14:43:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 15:59:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 15:59:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 15:59:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 15:59:34 ERROR: BUSCO analysis failed!
2025-12-10 15:59:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 12:11:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 12:11:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 12:11:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 12:11:11 ERROR: BUSCO analysis failed!
2025-12-10 12:11:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 12:11:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 12:11:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 12:11:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 12:11:30 ERROR: BUSCO analysis failed!
2025-12-10 12:11:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 12:33:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 12:33:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 12:33:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 12:33:33 ERROR: BUSCO analysis failed!
2025-12-10 12:33:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 12:46:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 12:46:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 12:46:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 12:46:05 ERROR: BUSCO analysis failed!
2025-12-10 12:46:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-10 12:52:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-10 12:52:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 12:52:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-10 12:52:24 ERROR: BUSCO analysis failed!
2025-12-10 12:52:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73259607/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73259607/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot |
| 1 | /ocean/projects/mcb140028p/xcgalaxy/main/staging/73259615/tool_script.sh: line 23: 45 KillShow full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/73259615/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'arthropoda_odb10' --miniprot |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73263881/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73263881/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | 2025-12-11 03:10:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-11 03:10:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-11 03:10:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-11 03:10:40 ERROR: BUSCO analysis failed!
2025-12-11 03:10:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-11 06:18:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-11 06:18:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-11 06:18:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-11 06:18:15 ERROR: BUSCO analysis failed!
2025-12-11 06:18:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-11 09:45:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-11 09:45:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-11 09:45:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-11 09:45:51 ERROR: BUSCO analysis failed!
2025-12-11 09:45:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-11 09:53:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-11 09:53:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz'
2025-12-11 09:53:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz'
2025-12-11 09:53:02 ERROR: BUSCO analysis failed!
2025-12-11 09:53:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-11 10:09:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-11 10:09:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz'
2025-12-11 10:09:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/firmicutes_odb10/refseq_db.faa.gz'
2025-12-11 10:09:07 ERROR: BUSCO analysis failed!
2025-12-11 10:09:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | FATAL: While checking container encryption: could not open image /scratch/xgalaxy/job_4Show full stderrFATAL: While checking container encryption: could not open image /scratch/xgalaxy/job_45450600/.cvmfsexec/dist/cvmfs/singularity.galaxyproject.org/all/mulled-v2-4eea244974a53a81efc346a4fa9bdfd103e1c9df:e8360df15ed14ce0294477d85f8763fa15108270-0: failed to retrieve path for /scratch/xgalaxy/job_45450600/.cvmfsexec/dist/cvmfs/singularity.galaxyproject.org/all/mulled-v2-4eea244974a53a81efc346a4fa9bdfd103e1c9df:e8360df15ed14ce0294477d85f8763fa15108270-0: lstat /scratch/xgalaxy/job_45450600/.cvmfsexec/dist/cvmfs/singularity.galaxyproject.org/all: no such file or directory |
| 1 | 2025-12-12 03:25:25 ERROR: The character "/" is present in the fasta header >gnl|extdb|pgShow full stderr2025-12-12 03:25:25 ERROR: The character "/" is present in the fasta header >gnl|extdb|pgaptmp_000003_DNA_replication/repair_protein_RecF_[Vibrio_splendidus], which will crash Reader. Please clean the header of your input file.
2025-12-12 03:25:25 ERROR: BUSCO analysis failed!
2025-12-12 03:25:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-12 05:58:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-12 05:58:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-12 05:58:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacteria_odb10/refseq_db.faa.gz'
2025-12-12 05:58:32 ERROR: BUSCO analysis failed!
2025-12-12 05:58:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 02:52:45 ERROR: Please provide a protein file as inputShow full stderr2025-12-13 02:52:45 ERROR: Please provide a protein file as input
2025-12-13 02:52:45 ERROR: BUSCO analysis failed!
2025-12-13 02:52:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 02:59:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 02:59:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/burkholderiales_odb10/refseq_db.faa.gz'
2025-12-13 02:59:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/burkholderiales_odb10/refseq_db.faa.gz'
2025-12-13 02:59:04 ERROR: BUSCO analysis failed!
2025-12-13 02:59:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 08:18:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 08:18:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 08:18:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 08:18:27 ERROR: BUSCO analysis failed!
2025-12-13 08:18:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 04:25:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 04:25:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/burkholderiales_odb10/refseq_db.faa.gz'
2025-12-13 04:25:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/burkholderiales_odb10/refseq_db.faa.gz'
2025-12-13 04:25:17 ERROR: BUSCO analysis failed!
2025-12-13 04:25:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 09:51:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 09:51:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 09:51:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 09:51:54 ERROR: BUSCO analysis failed!
2025-12-13 09:51:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 10:04:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 10:04:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 10:04:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 10:04:06 ERROR: BUSCO analysis failed!
2025-12-13 10:04:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 09:36:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 09:36:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 09:36:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 09:36:48 ERROR: BUSCO analysis failed!
2025-12-13 09:36:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 10:01:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 10:01:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 10:01:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 10:01:42 ERROR: BUSCO analysis failed!
2025-12-13 10:01:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 18:03:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 18:03:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:03:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:03:27 ERROR: BUSCO analysis failed!
2025-12-13 18:03:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 18:05:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 18:05:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:05:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:05:26 ERROR: BUSCO analysis failed!
2025-12-13 18:05:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 17:59:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 17:59:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 17:59:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 17:59:26 ERROR: BUSCO analysis failed!
2025-12-13 17:59:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 18:01:07 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 18:01:07 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:01:07 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:01:07 ERROR: BUSCO analysis failed!
2025-12-13 18:01:07 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 10:05:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 10:05:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 10:05:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 10:05:34 ERROR: BUSCO analysis failed!
2025-12-13 10:05:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 10:15:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 10:15:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 10:15:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 10:15:33 ERROR: BUSCO analysis failed!
2025-12-13 10:15:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 10:16:31 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 10:16:31 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 10:16:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 10:16:31 ERROR: BUSCO analysis failed!
2025-12-13 10:16:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 18:16:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 18:16:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:16:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:16:39 ERROR: BUSCO analysis failed!
2025-12-13 18:16:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 18:16:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 18:16:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:16:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:16:56 ERROR: BUSCO analysis failed!
2025-12-13 18:16:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 18:17:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 18:17:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:17:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:17:13 ERROR: BUSCO analysis failed!
2025-12-13 18:17:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 19:07:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 19:07:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 19:07:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 19:07:02 ERROR: BUSCO analysis failed!
2025-12-13 19:07:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 18:53:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 18:53:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:53:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 18:53:33 ERROR: BUSCO analysis failed!
2025-12-13 18:53:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 19:43:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 19:43:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 19:43:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 19:43:48 ERROR: BUSCO analysis failed!
2025-12-13 19:43:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-13 16:42:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-13 16:42:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 16:42:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-13 16:42:08 ERROR: BUSCO analysis failed!
2025-12-13 16:42:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-14 00:41:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-14 00:41:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 00:41:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 00:41:43 ERROR: BUSCO analysis failed!
2025-12-14 00:41:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-14 16:30:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-14 16:30:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 16:30:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 16:30:28 ERROR: BUSCO analysis failed!
2025-12-14 16:30:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /jetstream2/scratch/main/jobs/73343732/tool_script.sh: line 23: 31 Killed Show full stderr/jetstream2/scratch/main/jobs/73343732/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | 2025-12-14 20:20:34 ERROR: Duplicate of sequence >_scaffold_15_000207.1 in input fileShow full stderr2025-12-14 20:20:34 ERROR: Duplicate of sequence >_scaffold_15_000207.1 in input file
2025-12-14 20:20:34 ERROR: BUSCO analysis failed!
2025-12-14 20:20:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-15 04:29:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-15 04:29:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 04:29:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 04:29:09 ERROR: BUSCO analysis failed!
2025-12-15 04:29:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-15 04:29:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-15 04:29:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 04:29:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 04:29:53 ERROR: BUSCO analysis failed!
2025-12-15 04:29:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-14 23:32:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-14 23:32:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 23:32:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-14 23:32:12 ERROR: BUSCO analysis failed!
2025-12-14 23:32:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-15 11:03:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-15 11:03:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 11:03:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 11:03:43 ERROR: BUSCO analysis failed!
2025-12-15 11:03:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-15 14:10:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-15 14:10:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 14:10:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 14:10:45 ERROR: BUSCO analysis failed!
2025-12-15 14:10:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-15 12:03:31 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-15 12:03:31 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 12:03:31 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 12:03:31 ERROR: BUSCO analysis failed!
2025-12-15 12:03:31 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /anvil/scratch/x-xcgalaxy/main/staging/73357994/tool_script.sh: line 23: 75 Killed Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/73357994/tool_script.sh: line 23: 75 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | /ocean/projects/mcb140028p/xcgalaxy/main/staging/73357995/tool_script.sh: line 23: 45 KillShow full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/73357995/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357996/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357996/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357997/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357997/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | /ocean/projects/mcb140028p/xcgalaxy/main/staging/73357998/tool_script.sh: line 23: 45 KillShow full stderr/ocean/projects/mcb140028p/xcgalaxy/main/staging/73357998/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357999/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73357999/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | 2025-12-15 23:48:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-15 23:48:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 23:48:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 23:48:32 ERROR: BUSCO analysis failed!
2025-12-15 23:48:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 00:32:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 00:32:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 00:32:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 00:32:48 ERROR: BUSCO analysis failed!
2025-12-16 00:32:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 00:32:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 00:32:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 00:32:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 00:32:47 ERROR: BUSCO analysis failed!
2025-12-16 00:32:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-15 21:28:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-15 21:28:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 21:28:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 21:28:24 ERROR: BUSCO analysis failed!
2025-12-15 21:28:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 00:37:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 00:37:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 00:37:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 00:37:09 ERROR: BUSCO analysis failed!
2025-12-16 00:37:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-15 21:41:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-15 21:41:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 21:41:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-15 21:41:45 ERROR: BUSCO analysis failed!
2025-12-15 21:41:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 00:54:37 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 00:54:37 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 00:54:37 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 00:54:37 ERROR: BUSCO analysis failed!
2025-12-16 00:54:37 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 07:03:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 07:03:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 07:03:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 07:03:36 ERROR: BUSCO analysis failed!
2025-12-16 07:03:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 07:03:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 07:03:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 07:03:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 07:03:52 ERROR: BUSCO analysis failed!
2025-12-16 07:03:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 02:34:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 02:34:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 02:34:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 02:34:10 ERROR: BUSCO analysis failed!
2025-12-16 02:34:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 03:18:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 03:18:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 03:18:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 03:18:33 ERROR: BUSCO analysis failed!
2025-12-16 03:18:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 06:45:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 06:45:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 06:45:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 06:45:26 ERROR: BUSCO analysis failed!
2025-12-16 06:45:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 11:44:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 11:44:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 11:44:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 11:44:19 ERROR: BUSCO analysis failed!
2025-12-16 11:44:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 11:44:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 11:44:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 11:44:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 11:44:04 ERROR: BUSCO analysis failed!
2025-12-16 11:44:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 12:29:33 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 12:29:33 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 12:29:33 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 12:29:33 ERROR: BUSCO analysis failed!
2025-12-16 12:29:33 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 12:33:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 12:33:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 12:33:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 12:33:24 ERROR: BUSCO analysis failed!
2025-12-16 12:33:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:02:20 ERROR: Metaeuk did not recognize any genes matching the dataset tetraShow full stderr2025-12-16 15:02:20 ERROR: Metaeuk did not recognize any genes matching the dataset tetrapoda_odb10 in the input file. If this is unexpected, check your input file and your installation of Metaeuk
2025-12-16 15:02:20 ERROR: BUSCO analysis failed!
2025-12-16 15:02:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-17 06:06:24 ERROR: Metaeuk did not recognize any genes matching the dataset tetraShow full stderr2025-12-17 06:06:24 ERROR: Metaeuk did not recognize any genes matching the dataset tetrapoda_odb10 in the input file. If this is unexpected, check your input file and your installation of Metaeuk
2025-12-17 06:06:24 ERROR: BUSCO analysis failed!
2025-12-17 06:06:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:21:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:21:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:21:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:21:04 ERROR: BUSCO analysis failed!
2025-12-16 16:21:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:31:08 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:31:08 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/alteromonadales_odb10/refseq_db.faa.gz'
2025-12-16 16:31:08 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/alteromonadales_odb10/refseq_db.faa.gz'
2025-12-16 16:31:08 ERROR: BUSCO analysis failed!
2025-12-16 16:31:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:34:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:34:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/alteromonadales_odb10/refseq_db.faa.gz'
2025-12-16 16:34:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/alteromonadales_odb10/refseq_db.faa.gz'
2025-12-16 16:34:56 ERROR: BUSCO analysis failed!
2025-12-16 16:34:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:55:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:55:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-12-16 16:55:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/gammaproteobacteria_odb10/refseq_db.faa.gz'
2025-12-16 16:55:54 ERROR: BUSCO analysis failed!
2025-12-16 16:55:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /jetstream2/scratch/main/jobs/73377275/tool_script.sh: line 23: 31 Killed Show full stderr/jetstream2/scratch/main/jobs/73377275/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | /jetstream2/scratch/main/jobs/73378157/tool_script.sh: line 23: 31 Killed Show full stderr/jetstream2/scratch/main/jobs/73378157/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | /jetstream2/scratch/main/jobs/73379508/tool_script.sh: line 23: 31 Killed Show full stderr/jetstream2/scratch/main/jobs/73379508/tool_script.sh: line 23: 31 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | /anvil/scratch/x-xcgalaxy/main/staging/73381844/tool_script.sh: line 23: 74 Killed Show full stderr/anvil/scratch/x-xcgalaxy/main/staging/73381844/tool_script.sh: line 23: 74 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'basidiomycota_odb10' --miniprot |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73382933/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73382933/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'aves_odb10' --miniprot |
| 1 | 2025-12-16 17:02:38 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:02:38 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:02:38 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:02:38 ERROR: BUSCO analysis failed!
2025-12-16 17:02:38 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 14:08:20 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 14:08:20 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:08:20 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:08:20 ERROR: BUSCO analysis failed!
2025-12-16 14:08:20 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 14:22:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 14:22:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:22:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:22:21 ERROR: BUSCO analysis failed!
2025-12-16 14:22:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 18:13:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 18:13:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:13:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:13:34 ERROR: BUSCO analysis failed!
2025-12-16 18:13:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:16:13 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:16:13 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:16:13 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:16:13 ERROR: BUSCO analysis failed!
2025-12-16 15:16:13 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:24:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:24:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:24:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:24:04 ERROR: BUSCO analysis failed!
2025-12-16 15:24:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:29:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:29:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:29:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:29:04 ERROR: BUSCO analysis failed!
2025-12-16 15:29:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 18:31:35 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 18:31:35 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:31:35 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:31:35 ERROR: BUSCO analysis failed!
2025-12-16 18:31:35 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:39:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:39:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:39:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:39:52 ERROR: BUSCO analysis failed!
2025-12-16 15:39:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 18:50:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 18:50:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:50:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:50:55 ERROR: BUSCO analysis failed!
2025-12-16 18:50:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 18:53:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 18:53:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:53:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:53:42 ERROR: BUSCO analysis failed!
2025-12-16 18:53:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:56:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:56:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:56:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:56:21 ERROR: BUSCO analysis failed!
2025-12-16 15:56:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:18:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:18:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:18:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:18:15 ERROR: BUSCO analysis failed!
2025-12-16 16:18:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:20:52 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:20:52 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:20:52 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:20:52 ERROR: BUSCO analysis failed!
2025-12-16 16:20:52 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 19:28:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 19:28:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:28:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:28:48 ERROR: BUSCO analysis failed!
2025-12-16 19:28:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:07:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:07:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:07:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:07:28 ERROR: BUSCO analysis failed!
2025-12-16 16:07:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 17:05:12 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:05:12 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:05:12 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:05:12 ERROR: BUSCO analysis failed!
2025-12-16 17:05:12 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 17:34:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:34:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:34:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:34:50 ERROR: BUSCO analysis failed!
2025-12-16 17:34:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 17:51:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:51:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:51:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:51:23 ERROR: BUSCO analysis failed!
2025-12-16 17:51:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:03:09 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:03:09 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:03:09 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:03:09 ERROR: BUSCO analysis failed!
2025-12-16 16:03:09 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:37:18 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:37:18 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:37:18 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:37:18 ERROR: BUSCO analysis failed!
2025-12-16 15:37:18 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 19:49:50 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 19:49:50 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:49:50 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:49:50 ERROR: BUSCO analysis failed!
2025-12-16 19:49:50 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 17:45:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:45:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:45:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:45:48 ERROR: BUSCO analysis failed!
2025-12-16 17:45:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 14:53:54 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 14:53:54 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:53:54 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:53:54 ERROR: BUSCO analysis failed!
2025-12-16 14:53:54 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:01:51 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:01:51 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:01:51 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:01:51 ERROR: BUSCO analysis failed!
2025-12-16 15:01:51 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 18:18:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 18:18:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:18:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:18:48 ERROR: BUSCO analysis failed!
2025-12-16 18:18:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:26:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:26:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:26:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:26:32 ERROR: BUSCO analysis failed!
2025-12-16 15:26:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 14:30:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 14:30:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:30:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:30:27 ERROR: BUSCO analysis failed!
2025-12-16 14:30:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 18:44:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 18:44:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:44:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:44:49 ERROR: BUSCO analysis failed!
2025-12-16 18:44:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:00:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:00:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:00:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:00:28 ERROR: BUSCO analysis failed!
2025-12-16 16:00:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:03:10 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:03:10 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:03:10 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:03:10 ERROR: BUSCO analysis failed!
2025-12-16 16:03:10 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:26:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:26:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:26:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:26:06 ERROR: BUSCO analysis failed!
2025-12-16 16:26:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 14:11:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 14:11:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:11:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:11:15 ERROR: BUSCO analysis failed!
2025-12-16 14:11:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 17:16:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:16:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:16:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:16:48 ERROR: BUSCO analysis failed!
2025-12-16 17:16:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 14:19:40 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 14:19:40 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:19:40 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:19:40 ERROR: BUSCO analysis failed!
2025-12-16 14:19:40 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 17:25:16 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:25:16 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:25:16 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:25:16 ERROR: BUSCO analysis failed!
2025-12-16 17:25:16 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 17:27:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:27:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:27:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:27:48 ERROR: BUSCO analysis failed!
2025-12-16 17:27:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 14:37:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 14:37:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:37:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:37:28 ERROR: BUSCO analysis failed!
2025-12-16 14:37:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 17:40:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:40:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:40:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:40:49 ERROR: BUSCO analysis failed!
2025-12-16 17:40:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 17:43:21 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:43:21 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:43:21 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:43:21 ERROR: BUSCO analysis failed!
2025-12-16 17:43:21 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 14:48:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 14:48:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:48:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 14:48:26 ERROR: BUSCO analysis failed!
2025-12-16 14:48:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 17:56:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:56:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:56:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:56:48 ERROR: BUSCO analysis failed!
2025-12-16 17:56:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 17:59:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 17:59:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:59:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 17:59:25 ERROR: BUSCO analysis failed!
2025-12-16 17:59:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 18:07:29 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 18:07:29 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:07:29 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:07:29 ERROR: BUSCO analysis failed!
2025-12-16 18:07:29 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:21:24 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:21:24 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:21:24 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:21:24 ERROR: BUSCO analysis failed!
2025-12-16 15:21:24 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:42:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:42:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:42:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:42:19 ERROR: BUSCO analysis failed!
2025-12-16 15:42:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:47:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:47:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:47:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:47:36 ERROR: BUSCO analysis failed!
2025-12-16 15:47:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 19:14:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 19:14:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:14:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:14:48 ERROR: BUSCO analysis failed!
2025-12-16 19:14:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:31:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:31:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:31:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:31:36 ERROR: BUSCO analysis failed!
2025-12-16 16:31:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:34:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:34:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:34:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:34:05 ERROR: BUSCO analysis failed!
2025-12-16 16:34:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:36:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:36:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:36:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:36:32 ERROR: BUSCO analysis failed!
2025-12-16 16:36:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 19:57:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 19:57:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:57:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:57:49 ERROR: BUSCO analysis failed!
2025-12-16 19:57:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 20:00:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 20:00:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 20:00:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 20:00:48 ERROR: BUSCO analysis failed!
2025-12-16 20:00:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 19:41:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 19:41:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:41:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:41:49 ERROR: BUSCO analysis failed!
2025-12-16 19:41:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 18:34:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 18:34:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:34:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 18:34:47 ERROR: BUSCO analysis failed!
2025-12-16 18:34:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:06:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:06:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:06:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:06:01 ERROR: BUSCO analysis failed!
2025-12-16 16:06:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 15:04:19 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 15:04:19 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:04:19 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 15:04:19 ERROR: BUSCO analysis failed!
2025-12-16 15:04:19 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:23:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:23:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:23:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:23:23 ERROR: BUSCO analysis failed!
2025-12-16 16:23:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:39:02 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:39:02 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:39:02 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:39:02 ERROR: BUSCO analysis failed!
2025-12-16 16:39:02 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:44:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:44:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:44:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:44:26 ERROR: BUSCO analysis failed!
2025-12-16 16:44:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:47:01 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:47:01 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:47:01 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:47:01 ERROR: BUSCO analysis failed!
2025-12-16 16:47:01 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:52:23 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:52:23 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:52:23 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:52:23 ERROR: BUSCO analysis failed!
2025-12-16 16:52:23 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 16:54:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 16:54:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:54:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 16:54:49 ERROR: BUSCO analysis failed!
2025-12-16 16:54:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-16 19:11:47 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-16 19:11:47 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:11:47 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-16 19:11:47 ERROR: BUSCO analysis failed!
2025-12-16 19:11:47 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73384400/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73384400/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --auto-lineage-euk --miniprot |
| 1 | /expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73384496/tool_script.sh: line 23: Show full stderr/expanse/lustre/scratch/xgalaxy/temp_project/main/staging/73384496/tool_script.sh: line 23: 45 Killed busco --in 'input.fa' --mode 'geno' --out busco_galaxy --cpu ${GALAXY_SLOTS:-4} --evalue 0.001 --limit 3 --contig_break 10 --offline --download_path '/cvmfs/data.galaxyproject.org/byhand/busco/v5' --lineage_dataset 'basidiomycota_odb10' --miniprot |
| 1 | 2025-12-17 07:11:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-17 07:11:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 07:11:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 07:11:26 ERROR: BUSCO analysis failed!
2025-12-17 07:11:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-17 07:17:49 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-17 07:17:49 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 07:17:49 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 07:17:49 ERROR: BUSCO analysis failed!
2025-12-17 07:17:49 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-17 04:31:34 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-17 04:31:34 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 04:31:34 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 04:31:34 ERROR: BUSCO analysis failed!
2025-12-17 04:31:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-17 09:03:06 ERROR: The input file does not contain nucleotide sequences.Show full stderr2025-12-17 09:03:06 ERROR: The input file does not contain nucleotide sequences.
2025-12-17 09:03:06 ERROR: BUSCO analysis failed!
2025-12-17 09:03:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-17 09:09:59 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-17 09:09:59 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 09:09:59 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 09:09:59 ERROR: BUSCO analysis failed!
2025-12-17 09:09:59 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-17 09:09:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-17 09:09:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 09:09:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 09:09:17 ERROR: BUSCO analysis failed!
2025-12-17 09:09:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-17 20:41:04 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-17 20:41:04 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 20:41:04 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 20:41:04 ERROR: BUSCO analysis failed!
2025-12-17 20:41:04 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-17 21:06:27 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-17 21:06:27 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 21:06:27 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 21:06:27 ERROR: BUSCO analysis failed!
2025-12-17 21:06:27 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-17 21:08:15 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-17 21:08:15 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 21:08:15 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-17 21:08:15 ERROR: BUSCO analysis failed!
2025-12-17 21:08:15 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-17 21:11:56 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-17 21:11:56 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/rhizobium-agrobacterium_group_odb10/refseq_db.faa.gz'
2025-12-17 21:11:56 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/rhizobium-agrobacterium_group_odb10/refseq_db.faa.gz'
2025-12-17 21:11:56 ERROR: BUSCO analysis failed!
2025-12-17 21:11:56 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 09:16:45 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 09:16:45 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 09:16:45 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 09:16:45 ERROR: BUSCO analysis failed!
2025-12-18 09:16:45 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 04:22:41 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 04:22:41 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 04:22:41 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 04:22:41 ERROR: BUSCO analysis failed!
2025-12-18 04:22:41 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 09:19:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 09:19:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 09:19:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 09:19:22 ERROR: BUSCO analysis failed!
2025-12-18 09:19:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:13:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:13:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-18 12:13:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/enterobacterales_odb10/refseq_db.faa.gz'
2025-12-18 12:13:26 ERROR: BUSCO analysis failed!
2025-12-18 12:13:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:46:55 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:46:55 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 12:46:55 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 12:46:55 ERROR: BUSCO analysis failed!
2025-12-18 12:46:55 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:47:17 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:47:17 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 12:47:17 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 12:47:17 ERROR: BUSCO analysis failed!
2025-12-18 12:47:17 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:47:32 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:47:32 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 12:47:32 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 12:47:32 ERROR: BUSCO analysis failed!
2025-12-18 12:47:32 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 07:50:39 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 07:50:39 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 07:50:39 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 07:50:39 ERROR: BUSCO analysis failed!
2025-12-18 07:50:39 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:47:48 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:47:48 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 12:47:48 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 12:47:48 ERROR: BUSCO analysis failed!
2025-12-18 12:47:48 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:49:26 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:49:26 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 12:49:26 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 12:49:26 ERROR: BUSCO analysis failed!
2025-12-18 12:49:26 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:53:25 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:53:25 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:53:25 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:53:25 ERROR: BUSCO analysis failed!
2025-12-18 12:53:25 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:53:42 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:53:42 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:53:42 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:53:42 ERROR: BUSCO analysis failed!
2025-12-18 12:53:42 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:54:05 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:54:05 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:54:05 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:54:05 ERROR: BUSCO analysis failed!
2025-12-18 12:54:05 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:54:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:54:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:54:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:54:22 ERROR: BUSCO analysis failed!
2025-12-18 12:54:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:55:53 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:55:53 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:55:53 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:55:53 ERROR: BUSCO analysis failed!
2025-12-18 12:55:53 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 12:56:11 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 12:56:11 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:56:11 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacillales_odb10/refseq_db.faa.gz'
2025-12-18 12:56:11 ERROR: BUSCO analysis failed!
2025-12-18 12:56:11 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 13:00:28 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 13:00:28 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 165, in run
self.runner.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-18 13:00:28 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/bacilli_odb10/refseq_db.faa.gz'
2025-12-18 13:00:28 ERROR: BUSCO analysis failed!
2025-12-18 13:00:28 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 13:08:06 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 13:08:06 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 13:08:06 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 13:08:06 ERROR: BUSCO analysis failed!
2025-12-18 13:08:06 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 13:40:43 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 13:40:43 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 13:40:43 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 13:40:43 ERROR: BUSCO analysis failed!
2025-12-18 13:40:43 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 08:55:36 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 08:55:36 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 08:55:36 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 08:55:36 ERROR: BUSCO analysis failed!
2025-12-18 08:55:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 14:56:30 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 14:56:30 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 14:56:30 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 14:56:30 ERROR: BUSCO analysis failed!
2025-12-18 14:56:30 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 15:05:22 CRITICAL: Unhandled exception occurred:Show full stderr2025-12-18 15:05:22 CRITICAL: Unhandled exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 120, in run
self.get_lineage()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 65, in get_lineage
) = self.auto_select_lineage() # full path
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 86, in auto_select_lineage
asl.run_auto_selector()
File "/usr/local/lib/python3.10/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func
self.retval = func(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 109, in run_auto_selector
root_runners = self.run_lineages_list(self.all_lineages)
File "/usr/local/lib/python3.10/site-packages/busco/AutoLineage.py", line 156, in run_lineages_list
busco_run.run_analysis(callback=self.callback)
File "/usr/local/lib/python3.10/site-packages/busco/BuscoRunner.py", line 565, in run_analysis
self.analysis.run_analysis()
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1043, in run_analysis
self.run_miniprot(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/analysis/GenomeAnalysis.py", line 1064, in run_miniprot
self.miniprot_align_runner.configure_runner(incomplete_buscos)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/miniprot.py", line 175, in configure_runner
self.refseq_db = self.decompress_refseq_file(gzip_refseq)
File "/usr/local/lib/python3.10/site-packages/busco/busco_tools/base.py", line 378, in decompress_refseq_file
with gzip.open(gzip_file, "rb") as compressed_file:
File "/usr/local/lib/python3.10/gzip.py", line 58, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)
File "/usr/local/lib/python3.10/gzip.py", line 174, in __init__
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 15:05:22 ERROR: [Errno 2] No such file or directory: '/cvmfs/data.galaxyproject.org/byhand/busco/v5/lineages/archaea_odb10/refseq_db.faa.gz'
2025-12-18 15:05:22 ERROR: BUSCO analysis failed!
2025-12-18 15:05:22 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 10:18:36 ERROR: Retraining did not complete correctly. Check your Augustus confShow full stderr2025-12-18 10:18:36 ERROR: Retraining did not complete correctly. Check your Augustus config path environment variable.
2025-12-18 10:18:36 ERROR: BUSCO analysis failed!
2025-12-18 10:18:36 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 10:28:08 ERROR: No genes were recognized by BUSCO. Please check the content oShow full stderr2025-12-18 10:28:08 ERROR: No genes were recognized by BUSCO. Please check the content of your input file.
2025-12-18 10:28:08 ERROR: BUSCO analysis failed!
2025-12-18 10:28:08 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |
| 1 | 2025-12-18 20:13:34 ERROR: Retraining did not complete correctly. Check your Augustus confShow full stderr2025-12-18 20:13:34 ERROR: Retraining did not complete correctly. Check your Augustus config path environment variable.
2025-12-18 20:13:34 ERROR: BUSCO analysis failed!
2025-12-18 20:13:34 ERROR: Check the logs, read the user guide (https://busco.ezlab.org/busco_userguide.html), and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues |